nsv898164
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:56,629
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 367 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 367 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 105 SVs from 17 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv898164 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 91,201,089 | 91,219,086 | 91,244,223 | 91,257,717 |
| nsv898164 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 90,934,257 | 90,952,254 | 90,977,391 | 90,990,885 |
| nsv898164 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 90,573,905 | 90,591,902 | 90,617,039 | 90,630,533 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1534578 | copy number loss | MS11669 | SNP array | SNP genotyping analysis | 42 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1534578 | Remapped | Perfect | NC_000011.10:g.(91 201089_91219086)_( 91244223_91257717) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 91,201,089 | 91,219,086 | 91,244,223 | 91,257,717 |
| nssv1534578 | Remapped | Perfect | NC_000011.9:g.(909 34257_90952254)_(9 0977391_90990885)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 90,934,257 | 90,952,254 | 90,977,391 | 90,990,885 |
| nssv1534578 | Submitted genomic | NC_000011.8:g.(905 73905_90591902)_(9 0617039_90630533)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 90,573,905 | 90,591,902 | 90,617,039 | 90,630,533 |