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dbVar

Database of genomic structural variation

nsv898319

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:40,461

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 237 SVs from 37 studies. See in: genome view

Remapped(Score: Perfect):100,170,688-100,211,148

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv898319	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	100,170,688	100,172,688	100,201,986	100,211,148
nsv898319	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	100,041,420	100,043,420	100,072,718	100,081,880
nsv898319	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000011.8	Chr11	99,546,630	99,548,630	99,577,928	99,587,090

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1556266	copy number loss	MS21868	SNP array	SNP genotyping analysis	44
nssv1578330	copy number loss	IS34758	SNP array	SNP genotyping analysis	13

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1556266	Remapped	Perfect	NC_000011.10:g.(10 0170688_100172688) _(100201986_100211 148)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	100,170,688	100,172,688	100,201,986	100,211,148
nssv1578330	Remapped	Perfect	NC_000011.10:g.(10 0170688_100172688) _(100201986_100211 148)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	100,170,688	100,172,688	100,201,986	100,211,148
nssv1556266	Remapped	Perfect	NC_000011.9:g.(100 041420_100043420)_ (100072718_1000818 80)del	GRCh37.p13	First Pass	NC_000011.9	Chr11	100,041,420	100,043,420	100,072,718	100,081,880
nssv1578330	Remapped	Perfect	NC_000011.9:g.(100 041420_100043420)_ (100072718_1000818 80)del	GRCh37.p13	First Pass	NC_000011.9	Chr11	100,041,420	100,043,420	100,072,718	100,081,880
nssv1556266	Submitted genomic		NC_000011.8:g.(995 46630_99548630)_(9 9577928_99587090)d el	NCBI36 (hg18)		NC_000011.8	Chr11	99,546,630	99,548,630	99,577,928	99,587,090
nssv1578330	Submitted genomic		NC_000011.8:g.(995 46630_99548630)_(9 9577928_99587090)d el	NCBI36 (hg18)		NC_000011.8	Chr11	99,546,630	99,548,630	99,577,928	99,587,090

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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