nsv898379
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:14
- Validation:Not tested
- Clinical Assertions: No
- Region Size:24,275
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 385 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 385 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 107 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv898379 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 107,778,300 | 107,785,223 | 107,800,900 | 107,802,574 |
| nsv898379 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 107,649,026 | 107,655,949 | 107,671,626 | 107,673,300 |
| nsv898379 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 107,154,236 | 107,161,159 | 107,176,836 | 107,178,510 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1547315 | copy number gain | MS17310 | SNP array | SNP genotyping analysis | 12 |
| nssv1567910 | copy number gain | IS31171 | SNP array | SNP genotyping analysis | 6 |
| nssv1574528 | copy number gain | IS33590 | SNP array | SNP genotyping analysis | 13 |
| nssv1574554 | copy number gain | IS33596 | SNP array | SNP genotyping analysis | 13 |
| nssv1577739 | copy number gain | IS34543 | SNP array | SNP genotyping analysis | 21 |
| nssv1585162 | copy number gain | IS37325 | SNP array | SNP genotyping analysis | 8 |
| nssv1587506 | copy number gain | IS38058 | SNP array | SNP genotyping analysis | 15 |
| nssv1587776 | copy number gain | IS38111 | SNP array | SNP genotyping analysis | 10 |
| nssv1589295 | copy number gain | IS38334 | SNP array | SNP genotyping analysis | 10 |
| nssv1590246 | copy number gain | IS38475 | SNP array | SNP genotyping analysis | 8 |
| nssv1590693 | copy number gain | IS38554 | SNP array | SNP genotyping analysis | 12 |
| nssv1593244 | copy number gain | IS39386 | SNP array | SNP genotyping analysis | 10 |
| nssv1597929 | copy number gain | IS41105 | SNP array | SNP genotyping analysis | 11 |
| nssv1600619 | copy number gain | IS41905 | SNP array | SNP genotyping analysis | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1547315 | Remapped | Perfect | NC_000011.10:g.(10 7778300_107785223) _(107800900_107802 574)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,778,300 | 107,785,223 | 107,800,900 | 107,802,574 |
| nssv1567910 | Remapped | Perfect | NC_000011.10:g.(10 7778300_107785223) _(107800900_107802 574)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,778,300 | 107,785,223 | 107,800,900 | 107,802,574 |
| nssv1574528 | Remapped | Perfect | NC_000011.10:g.(10 7778300_107785223) _(107800900_107802 574)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,778,300 | 107,785,223 | 107,800,900 | 107,802,574 |
| nssv1574554 | Remapped | Perfect | NC_000011.10:g.(10 7778300_107785223) _(107800900_107802 574)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,778,300 | 107,785,223 | 107,800,900 | 107,802,574 |
| nssv1577739 | Remapped | Perfect | NC_000011.10:g.(10 7778300_107785223) _(107800900_107802 574)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,778,300 | 107,785,223 | 107,800,900 | 107,802,574 |
| nssv1585162 | Remapped | Perfect | NC_000011.10:g.(10 7778300_107785223) _(107800900_107802 574)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,778,300 | 107,785,223 | 107,800,900 | 107,802,574 |
| nssv1587506 | Remapped | Perfect | NC_000011.10:g.(10 7778300_107785223) _(107800900_107802 574)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,778,300 | 107,785,223 | 107,800,900 | 107,802,574 |
| nssv1587776 | Remapped | Perfect | NC_000011.10:g.(10 7778300_107785223) _(107800900_107802 574)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,778,300 | 107,785,223 | 107,800,900 | 107,802,574 |
| nssv1589295 | Remapped | Perfect | NC_000011.10:g.(10 7778300_107785223) _(107800900_107802 574)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,778,300 | 107,785,223 | 107,800,900 | 107,802,574 |
| nssv1590246 | Remapped | Perfect | NC_000011.10:g.(10 7778300_107785223) _(107800900_107802 574)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,778,300 | 107,785,223 | 107,800,900 | 107,802,574 |
| nssv1590693 | Remapped | Perfect | NC_000011.10:g.(10 7778300_107785223) _(107800900_107802 574)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,778,300 | 107,785,223 | 107,800,900 | 107,802,574 |
| nssv1593244 | Remapped | Perfect | NC_000011.10:g.(10 7778300_107785223) _(107800900_107802 574)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,778,300 | 107,785,223 | 107,800,900 | 107,802,574 |
| nssv1597929 | Remapped | Perfect | NC_000011.10:g.(10 7778300_107785223) _(107800900_107802 574)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,778,300 | 107,785,223 | 107,800,900 | 107,802,574 |
| nssv1600619 | Remapped | Perfect | NC_000011.10:g.(10 7778300_107785223) _(107800900_107802 574)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,778,300 | 107,785,223 | 107,800,900 | 107,802,574 |
| nssv1547315 | Remapped | Perfect | NC_000011.9:g.(107 649026_107655949)_ (107671626_1076733 00)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,649,026 | 107,655,949 | 107,671,626 | 107,673,300 |
| nssv1567910 | Remapped | Perfect | NC_000011.9:g.(107 649026_107655949)_ (107671626_1076733 00)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,649,026 | 107,655,949 | 107,671,626 | 107,673,300 |
| nssv1574528 | Remapped | Perfect | NC_000011.9:g.(107 649026_107655949)_ (107671626_1076733 00)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,649,026 | 107,655,949 | 107,671,626 | 107,673,300 |
| nssv1574554 | Remapped | Perfect | NC_000011.9:g.(107 649026_107655949)_ (107671626_1076733 00)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,649,026 | 107,655,949 | 107,671,626 | 107,673,300 |
| nssv1577739 | Remapped | Perfect | NC_000011.9:g.(107 649026_107655949)_ (107671626_1076733 00)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,649,026 | 107,655,949 | 107,671,626 | 107,673,300 |
| nssv1585162 | Remapped | Perfect | NC_000011.9:g.(107 649026_107655949)_ (107671626_1076733 00)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,649,026 | 107,655,949 | 107,671,626 | 107,673,300 |
| nssv1587506 | Remapped | Perfect | NC_000011.9:g.(107 649026_107655949)_ (107671626_1076733 00)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,649,026 | 107,655,949 | 107,671,626 | 107,673,300 |
| nssv1587776 | Remapped | Perfect | NC_000011.9:g.(107 649026_107655949)_ (107671626_1076733 00)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,649,026 | 107,655,949 | 107,671,626 | 107,673,300 |
| nssv1589295 | Remapped | Perfect | NC_000011.9:g.(107 649026_107655949)_ (107671626_1076733 00)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,649,026 | 107,655,949 | 107,671,626 | 107,673,300 |
| nssv1590246 | Remapped | Perfect | NC_000011.9:g.(107 649026_107655949)_ (107671626_1076733 00)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,649,026 | 107,655,949 | 107,671,626 | 107,673,300 |
| nssv1590693 | Remapped | Perfect | NC_000011.9:g.(107 649026_107655949)_ (107671626_1076733 00)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,649,026 | 107,655,949 | 107,671,626 | 107,673,300 |
| nssv1593244 | Remapped | Perfect | NC_000011.9:g.(107 649026_107655949)_ (107671626_1076733 00)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,649,026 | 107,655,949 | 107,671,626 | 107,673,300 |
| nssv1597929 | Remapped | Perfect | NC_000011.9:g.(107 649026_107655949)_ (107671626_1076733 00)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,649,026 | 107,655,949 | 107,671,626 | 107,673,300 |
| nssv1600619 | Remapped | Perfect | NC_000011.9:g.(107 649026_107655949)_ (107671626_1076733 00)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,649,026 | 107,655,949 | 107,671,626 | 107,673,300 |
| nssv1547315 | Submitted genomic | NC_000011.8:g.(107 154236_107161159)_ (107176836_1071785 10)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 107,154,236 | 107,161,159 | 107,176,836 | 107,178,510 | ||
| nssv1567910 | Submitted genomic | NC_000011.8:g.(107 154236_107161159)_ (107176836_1071785 10)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 107,154,236 | 107,161,159 | 107,176,836 | 107,178,510 | ||
| nssv1574528 | Submitted genomic | NC_000011.8:g.(107 154236_107161159)_ (107176836_1071785 10)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 107,154,236 | 107,161,159 | 107,176,836 | 107,178,510 | ||
| nssv1574554 | Submitted genomic | NC_000011.8:g.(107 154236_107161159)_ (107176836_1071785 10)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 107,154,236 | 107,161,159 | 107,176,836 | 107,178,510 | ||
| nssv1577739 | Submitted genomic | NC_000011.8:g.(107 154236_107161159)_ (107176836_1071785 10)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 107,154,236 | 107,161,159 | 107,176,836 | 107,178,510 | ||
| nssv1585162 | Submitted genomic | NC_000011.8:g.(107 154236_107161159)_ (107176836_1071785 10)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 107,154,236 | 107,161,159 | 107,176,836 | 107,178,510 | ||
| nssv1587506 | Submitted genomic | NC_000011.8:g.(107 154236_107161159)_ (107176836_1071785 10)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 107,154,236 | 107,161,159 | 107,176,836 | 107,178,510 | ||
| nssv1587776 | Submitted genomic | NC_000011.8:g.(107 154236_107161159)_ (107176836_1071785 10)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 107,154,236 | 107,161,159 | 107,176,836 | 107,178,510 | ||
| nssv1589295 | Submitted genomic | NC_000011.8:g.(107 154236_107161159)_ (107176836_1071785 10)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 107,154,236 | 107,161,159 | 107,176,836 | 107,178,510 | ||
| nssv1590246 | Submitted genomic | NC_000011.8:g.(107 154236_107161159)_ (107176836_1071785 10)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 107,154,236 | 107,161,159 | 107,176,836 | 107,178,510 | ||
| nssv1590693 | Submitted genomic | NC_000011.8:g.(107 154236_107161159)_ (107176836_1071785 10)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 107,154,236 | 107,161,159 | 107,176,836 | 107,178,510 | ||
| nssv1593244 | Submitted genomic | NC_000011.8:g.(107 154236_107161159)_ (107176836_1071785 10)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 107,154,236 | 107,161,159 | 107,176,836 | 107,178,510 | ||
| nssv1597929 | Submitted genomic | NC_000011.8:g.(107 154236_107161159)_ (107176836_1071785 10)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 107,154,236 | 107,161,159 | 107,176,836 | 107,178,510 | ||
| nssv1600619 | Submitted genomic | NC_000011.8:g.(107 154236_107161159)_ (107176836_1071785 10)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 107,154,236 | 107,161,159 | 107,176,836 | 107,178,510 |