nsv898501
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:105,525
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1254 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 1254 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 500 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv898501 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 134,479,860 | 134,483,933 | 134,579,353 | 134,585,384 |
| nsv898501 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 134,349,754 | 134,353,827 | 134,449,247 | 134,455,278 |
| nsv898501 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 133,854,964 | 133,859,037 | 133,954,457 | 133,960,488 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1552451 | copy number loss | MS19437 | SNP array | SNP genotyping analysis | 18 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1552451 | Remapped | Perfect | NC_000011.10:g.(13 4479860_134483933) _(134579353_134585 384)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 134,479,860 | 134,483,933 | 134,579,353 | 134,585,384 |
| nssv1552451 | Remapped | Perfect | NC_000011.9:g.(134 349754_134353827)_ (134449247_1344552 78)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 134,349,754 | 134,353,827 | 134,449,247 | 134,455,278 |
| nssv1552451 | Submitted genomic | NC_000011.8:g.(133 854964_133859037)_ (133954457_1339604 88)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 133,854,964 | 133,859,037 | 133,954,457 | 133,960,488 |