nsv898510
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:112,145
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1253 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 1253 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 506 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv898510 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 134,484,618 | 134,484,754 | 134,595,326 | 134,596,762 |
| nsv898510 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 134,354,512 | 134,354,648 | 134,465,220 | 134,466,656 |
| nsv898510 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 133,859,722 | 133,859,858 | 133,970,430 | 133,971,866 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1547500 | copy number loss | MS17400 | SNP array | SNP genotyping analysis | 9 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1547500 | Remapped | Perfect | NC_000011.10:g.(13 4484618_134484754) _(134595326_134596 762)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 134,484,618 | 134,484,754 | 134,595,326 | 134,596,762 |
| nssv1547500 | Remapped | Perfect | NC_000011.9:g.(134 354512_134354648)_ (134465220_1344666 56)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 134,354,512 | 134,354,648 | 134,465,220 | 134,466,656 |
| nssv1547500 | Submitted genomic | NC_000011.8:g.(133 859722_133859858)_ (133970430_1339718 66)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 133,859,722 | 133,859,858 | 133,970,430 | 133,971,866 |