nsv899190
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:200,032
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 961 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 961 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 288 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv899190 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 63,545,960 | 63,553,914 | 63,725,405 | 63,745,991 |
| nsv899190 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000012.11 | Chr12 | 63,939,740 | 63,947,694 | 64,119,185 | 64,139,771 |
| nsv899190 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000012.10 | Chr12 | 62,226,007 | 62,233,961 | 62,405,452 | 62,426,038 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1529585 | copy number gain | MS10061 | SNP array | SNP genotyping analysis | 11 |
| nssv1540273 | copy number gain | MS14769 | SNP array | SNP genotyping analysis | 11 |
| nssv1550746 | copy number gain | MS18588 | SNP array | SNP genotyping analysis | 9 |
| nssv1560420 | copy number gain | MS24476 | SNP array | SNP genotyping analysis | 13 |
| nssv1562652 | copy number gain | MS25690 | SNP array | SNP genotyping analysis | 16 |
| nssv1584456 | copy number gain | IS37030 | SNP array | SNP genotyping analysis | 6 |
| nssv1592873 | copy number gain | IS39258 | SNP array | SNP genotyping analysis | 92 |
| nssv1598282 | copy number gain | IS41331 | SNP array | SNP genotyping analysis | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1529585 | Remapped | Perfect | NC_000012.12:g.(63 545960_63553914)_( 63725405_63745991) dup | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 63,545,960 | 63,553,914 | 63,725,405 | 63,745,991 |
| nssv1540273 | Remapped | Perfect | NC_000012.12:g.(63 545960_63553914)_( 63725405_63745991) dup | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 63,545,960 | 63,553,914 | 63,725,405 | 63,745,991 |
| nssv1550746 | Remapped | Perfect | NC_000012.12:g.(63 545960_63553914)_( 63725405_63745991) dup | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 63,545,960 | 63,553,914 | 63,725,405 | 63,745,991 |
| nssv1560420 | Remapped | Perfect | NC_000012.12:g.(63 545960_63553914)_( 63725405_63745991) dup | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 63,545,960 | 63,553,914 | 63,725,405 | 63,745,991 |
| nssv1562652 | Remapped | Perfect | NC_000012.12:g.(63 545960_63553914)_( 63725405_63745991) dup | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 63,545,960 | 63,553,914 | 63,725,405 | 63,745,991 |
| nssv1584456 | Remapped | Perfect | NC_000012.12:g.(63 545960_63553914)_( 63725405_63745991) dup | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 63,545,960 | 63,553,914 | 63,725,405 | 63,745,991 |
| nssv1592873 | Remapped | Perfect | NC_000012.12:g.(63 545960_63553914)_( 63725405_63745991) dup | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 63,545,960 | 63,553,914 | 63,725,405 | 63,745,991 |
| nssv1598282 | Remapped | Perfect | NC_000012.12:g.(63 545960_63553914)_( 63725405_63745991) dup | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 63,545,960 | 63,553,914 | 63,725,405 | 63,745,991 |
| nssv1529585 | Remapped | Perfect | NC_000012.11:g.(63 939740_63947694)_( 64119185_64139771) dup | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 63,939,740 | 63,947,694 | 64,119,185 | 64,139,771 |
| nssv1540273 | Remapped | Perfect | NC_000012.11:g.(63 939740_63947694)_( 64119185_64139771) dup | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 63,939,740 | 63,947,694 | 64,119,185 | 64,139,771 |
| nssv1550746 | Remapped | Perfect | NC_000012.11:g.(63 939740_63947694)_( 64119185_64139771) dup | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 63,939,740 | 63,947,694 | 64,119,185 | 64,139,771 |
| nssv1560420 | Remapped | Perfect | NC_000012.11:g.(63 939740_63947694)_( 64119185_64139771) dup | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 63,939,740 | 63,947,694 | 64,119,185 | 64,139,771 |
| nssv1562652 | Remapped | Perfect | NC_000012.11:g.(63 939740_63947694)_( 64119185_64139771) dup | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 63,939,740 | 63,947,694 | 64,119,185 | 64,139,771 |
| nssv1584456 | Remapped | Perfect | NC_000012.11:g.(63 939740_63947694)_( 64119185_64139771) dup | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 63,939,740 | 63,947,694 | 64,119,185 | 64,139,771 |
| nssv1592873 | Remapped | Perfect | NC_000012.11:g.(63 939740_63947694)_( 64119185_64139771) dup | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 63,939,740 | 63,947,694 | 64,119,185 | 64,139,771 |
| nssv1598282 | Remapped | Perfect | NC_000012.11:g.(63 939740_63947694)_( 64119185_64139771) dup | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 63,939,740 | 63,947,694 | 64,119,185 | 64,139,771 |
| nssv1529585 | Submitted genomic | NC_000012.10:g.(62 226007_62233961)_( 62405452_62426038) dup | NCBI36 (hg18) | NC_000012.10 | Chr12 | 62,226,007 | 62,233,961 | 62,405,452 | 62,426,038 | ||
| nssv1540273 | Submitted genomic | NC_000012.10:g.(62 226007_62233961)_( 62405452_62426038) dup | NCBI36 (hg18) | NC_000012.10 | Chr12 | 62,226,007 | 62,233,961 | 62,405,452 | 62,426,038 | ||
| nssv1550746 | Submitted genomic | NC_000012.10:g.(62 226007_62233961)_( 62405452_62426038) dup | NCBI36 (hg18) | NC_000012.10 | Chr12 | 62,226,007 | 62,233,961 | 62,405,452 | 62,426,038 | ||
| nssv1560420 | Submitted genomic | NC_000012.10:g.(62 226007_62233961)_( 62405452_62426038) dup | NCBI36 (hg18) | NC_000012.10 | Chr12 | 62,226,007 | 62,233,961 | 62,405,452 | 62,426,038 | ||
| nssv1562652 | Submitted genomic | NC_000012.10:g.(62 226007_62233961)_( 62405452_62426038) dup | NCBI36 (hg18) | NC_000012.10 | Chr12 | 62,226,007 | 62,233,961 | 62,405,452 | 62,426,038 | ||
| nssv1584456 | Submitted genomic | NC_000012.10:g.(62 226007_62233961)_( 62405452_62426038) dup | NCBI36 (hg18) | NC_000012.10 | Chr12 | 62,226,007 | 62,233,961 | 62,405,452 | 62,426,038 | ||
| nssv1592873 | Submitted genomic | NC_000012.10:g.(62 226007_62233961)_( 62405452_62426038) dup | NCBI36 (hg18) | NC_000012.10 | Chr12 | 62,226,007 | 62,233,961 | 62,405,452 | 62,426,038 | ||
| nssv1598282 | Submitted genomic | NC_000012.10:g.(62 226007_62233961)_( 62405452_62426038) dup | NCBI36 (hg18) | NC_000012.10 | Chr12 | 62,226,007 | 62,233,961 | 62,405,452 | 62,426,038 |