nsv899361
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:540,023
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1966 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 1966 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 776 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv899361 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 83,795,867 | 83,806,323 | 84,311,528 | 84,335,889 |
| nsv899361 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000012.11 | Chr12 | 84,189,646 | 84,200,102 | 84,705,307 | 84,729,668 |
| nsv899361 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000012.10 | Chr12 | 82,713,777 | 82,724,233 | 83,229,438 | 83,253,799 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1597924 | copy number loss | IS41113 | SNP array | SNP genotyping analysis | 106 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1597924 | Remapped | Perfect | NC_000012.12:g.(83 795867_83806323)_( 84311528_84335889) del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 83,795,867 | 83,806,323 | 84,311,528 | 84,335,889 |
| nssv1597924 | Remapped | Perfect | NC_000012.11:g.(84 189646_84200102)_( 84705307_84729668) del | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 84,189,646 | 84,200,102 | 84,705,307 | 84,729,668 |
| nssv1597924 | Submitted genomic | NC_000012.10:g.(82 713777_82724233)_( 83229438_83253799) del | NCBI36 (hg18) | NC_000012.10 | Chr12 | 82,713,777 | 82,724,233 | 83,229,438 | 83,253,799 |