nsv899669
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:9
- Validation:Not tested
- Clinical Assertions: No
- Region Size:29,134
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 599 SVs from 92 studies. See in: genome view
Overlapping variant regions from other studies: 599 SVs from 92 studies. See in: genome view
Overlapping variant regions from other studies: 221 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv899669 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 131,315,630 | 131,318,415 | 131,340,251 | 131,344,763 |
| nsv899669 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000012.11 | Chr12 | 131,800,175 | 131,802,960 | 131,824,796 | 131,829,308 |
| nsv899669 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000012.10 | Chr12 | 130,366,128 | 130,368,913 | 130,390,749 | 130,395,261 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1515468 | copy number loss | SP56200 | SNP array | SNP genotyping analysis | 23 |
| nssv1522854 | copy number loss | SP53471 | SNP array | SNP genotyping analysis | 9 |
| nssv1522992 | copy number loss | SP53550 | SNP array | SNP genotyping analysis | 20 |
| nssv1526479 | copy number loss | SP57593 | SNP array | SNP genotyping analysis | 11 |
| nssv1526681 | copy number loss | SP57716 | SNP array | SNP genotyping analysis | nssv1526680, nssv1526682 |
| nssv1526966 | copy number loss | SP58026 | SNP array | SNP genotyping analysis | 14 |
| nssv1528187 | copy number loss | SP81152 | SNP array | SNP genotyping analysis | 8 |
| nssv1529329 | copy number loss | SP81504 | SNP array | SNP genotyping analysis | 13 |
| nssv1541903 | copy number loss | MS15539 | SNP array | SNP genotyping analysis | 10 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1515468 | Remapped | Perfect | NC_000012.12:g.(13 1315630_131318415) _(131340251_131344 763)del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 131,315,630 | 131,318,415 | 131,340,251 | 131,344,763 |
| nssv1522854 | Remapped | Perfect | NC_000012.12:g.(13 1315630_131318415) _(131340251_131344 763)del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 131,315,630 | 131,318,415 | 131,340,251 | 131,344,763 |
| nssv1522992 | Remapped | Perfect | NC_000012.12:g.(13 1315630_131318415) _(131340251_131344 763)del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 131,315,630 | 131,318,415 | 131,340,251 | 131,344,763 |
| nssv1526479 | Remapped | Perfect | NC_000012.12:g.(13 1315630_131318415) _(131340251_131344 763)del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 131,315,630 | 131,318,415 | 131,340,251 | 131,344,763 |
| nssv1526681 | Remapped | Perfect | NC_000012.12:g.(13 1315630_131318415) _(131340251_131344 763)del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 131,315,630 | 131,318,415 | 131,340,251 | 131,344,763 |
| nssv1526966 | Remapped | Perfect | NC_000012.12:g.(13 1315630_131318415) _(131340251_131344 763)del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 131,315,630 | 131,318,415 | 131,340,251 | 131,344,763 |
| nssv1528187 | Remapped | Perfect | NC_000012.12:g.(13 1315630_131318415) _(131340251_131344 763)del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 131,315,630 | 131,318,415 | 131,340,251 | 131,344,763 |
| nssv1529329 | Remapped | Perfect | NC_000012.12:g.(13 1315630_131318415) _(131340251_131344 763)del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 131,315,630 | 131,318,415 | 131,340,251 | 131,344,763 |
| nssv1541903 | Remapped | Perfect | NC_000012.12:g.(13 1315630_131318415) _(131340251_131344 763)del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 131,315,630 | 131,318,415 | 131,340,251 | 131,344,763 |
| nssv1515468 | Remapped | Perfect | NC_000012.11:g.(13 1800175_131802960) _(131824796_131829 308)del | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 131,800,175 | 131,802,960 | 131,824,796 | 131,829,308 |
| nssv1522854 | Remapped | Perfect | NC_000012.11:g.(13 1800175_131802960) _(131824796_131829 308)del | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 131,800,175 | 131,802,960 | 131,824,796 | 131,829,308 |
| nssv1522992 | Remapped | Perfect | NC_000012.11:g.(13 1800175_131802960) _(131824796_131829 308)del | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 131,800,175 | 131,802,960 | 131,824,796 | 131,829,308 |
| nssv1526479 | Remapped | Perfect | NC_000012.11:g.(13 1800175_131802960) _(131824796_131829 308)del | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 131,800,175 | 131,802,960 | 131,824,796 | 131,829,308 |
| nssv1526681 | Remapped | Perfect | NC_000012.11:g.(13 1800175_131802960) _(131824796_131829 308)del | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 131,800,175 | 131,802,960 | 131,824,796 | 131,829,308 |
| nssv1526966 | Remapped | Perfect | NC_000012.11:g.(13 1800175_131802960) _(131824796_131829 308)del | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 131,800,175 | 131,802,960 | 131,824,796 | 131,829,308 |
| nssv1528187 | Remapped | Perfect | NC_000012.11:g.(13 1800175_131802960) _(131824796_131829 308)del | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 131,800,175 | 131,802,960 | 131,824,796 | 131,829,308 |
| nssv1529329 | Remapped | Perfect | NC_000012.11:g.(13 1800175_131802960) _(131824796_131829 308)del | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 131,800,175 | 131,802,960 | 131,824,796 | 131,829,308 |
| nssv1541903 | Remapped | Perfect | NC_000012.11:g.(13 1800175_131802960) _(131824796_131829 308)del | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 131,800,175 | 131,802,960 | 131,824,796 | 131,829,308 |
| nssv1515468 | Submitted genomic | NC_000012.10:g.(13 0366128_130368913) _(130390749_130395 261)del | NCBI36 (hg18) | NC_000012.10 | Chr12 | 130,366,128 | 130,368,913 | 130,390,749 | 130,395,261 | ||
| nssv1522854 | Submitted genomic | NC_000012.10:g.(13 0366128_130368913) _(130390749_130395 261)del | NCBI36 (hg18) | NC_000012.10 | Chr12 | 130,366,128 | 130,368,913 | 130,390,749 | 130,395,261 | ||
| nssv1522992 | Submitted genomic | NC_000012.10:g.(13 0366128_130368913) _(130390749_130395 261)del | NCBI36 (hg18) | NC_000012.10 | Chr12 | 130,366,128 | 130,368,913 | 130,390,749 | 130,395,261 | ||
| nssv1526479 | Submitted genomic | NC_000012.10:g.(13 0366128_130368913) _(130390749_130395 261)del | NCBI36 (hg18) | NC_000012.10 | Chr12 | 130,366,128 | 130,368,913 | 130,390,749 | 130,395,261 | ||
| nssv1526681 | Submitted genomic | NC_000012.10:g.(13 0366128_130368913) _(130390749_130395 261)del | NCBI36 (hg18) | NC_000012.10 | Chr12 | 130,366,128 | 130,368,913 | 130,390,749 | 130,395,261 | ||
| nssv1526966 | Submitted genomic | NC_000012.10:g.(13 0366128_130368913) _(130390749_130395 261)del | NCBI36 (hg18) | NC_000012.10 | Chr12 | 130,366,128 | 130,368,913 | 130,390,749 | 130,395,261 | ||
| nssv1528187 | Submitted genomic | NC_000012.10:g.(13 0366128_130368913) _(130390749_130395 261)del | NCBI36 (hg18) | NC_000012.10 | Chr12 | 130,366,128 | 130,368,913 | 130,390,749 | 130,395,261 | ||
| nssv1529329 | Submitted genomic | NC_000012.10:g.(13 0366128_130368913) _(130390749_130395 261)del | NCBI36 (hg18) | NC_000012.10 | Chr12 | 130,366,128 | 130,368,913 | 130,390,749 | 130,395,261 | ||
| nssv1541903 | Submitted genomic | NC_000012.10:g.(13 0366128_130368913) _(130390749_130395 261)del | NCBI36 (hg18) | NC_000012.10 | Chr12 | 130,366,128 | 130,368,913 | 130,390,749 | 130,395,261 |