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dbVar

Database of genomic structural variation

nsv899901

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:28,349

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 379 SVs from 68 studies. See in: genome view

Remapped(Score: Perfect):22,838,784-22,867,132

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv899901	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	22,838,784	22,848,383	22,860,923	22,867,132
nsv899901	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000013.10	Chr13	23,412,923	23,422,522	23,435,062	23,441,271
nsv899901	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000013.9	Chr13	22,310,923	22,320,522	22,333,062	22,339,271

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1569973	copy number loss	IS31758	SNP array	SNP genotyping analysis	44
nssv1570249	copy number loss	IS31837	SNP array	SNP genotyping analysis	34
nssv1574613	copy number loss	IS33601	SNP array	SNP genotyping analysis	97
nssv1574744	copy number loss	IS33616	SNP array	SNP genotyping analysis	58
nssv1588046	copy number loss	IS38148	SNP array	SNP genotyping analysis	24

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1569973	Remapped	Perfect	NC_000013.11:g.(22 838784_22848383)_( 22860923_22867132) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	22,838,784	22,848,383	22,860,923	22,867,132
nssv1570249	Remapped	Perfect	NC_000013.11:g.(22 838784_22848383)_( 22860923_22867132) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	22,838,784	22,848,383	22,860,923	22,867,132
nssv1574613	Remapped	Perfect	NC_000013.11:g.(22 838784_22848383)_( 22860923_22867132) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	22,838,784	22,848,383	22,860,923	22,867,132
nssv1574744	Remapped	Perfect	NC_000013.11:g.(22 838784_22848383)_( 22860923_22867132) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	22,838,784	22,848,383	22,860,923	22,867,132
nssv1588046	Remapped	Perfect	NC_000013.11:g.(22 838784_22848383)_( 22860923_22867132) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	22,838,784	22,848,383	22,860,923	22,867,132
nssv1569973	Remapped	Perfect	NC_000013.10:g.(23 412923_23422522)_( 23435062_23441271) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	23,412,923	23,422,522	23,435,062	23,441,271
nssv1570249	Remapped	Perfect	NC_000013.10:g.(23 412923_23422522)_( 23435062_23441271) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	23,412,923	23,422,522	23,435,062	23,441,271
nssv1574613	Remapped	Perfect	NC_000013.10:g.(23 412923_23422522)_( 23435062_23441271) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	23,412,923	23,422,522	23,435,062	23,441,271
nssv1574744	Remapped	Perfect	NC_000013.10:g.(23 412923_23422522)_( 23435062_23441271) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	23,412,923	23,422,522	23,435,062	23,441,271
nssv1588046	Remapped	Perfect	NC_000013.10:g.(23 412923_23422522)_( 23435062_23441271) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	23,412,923	23,422,522	23,435,062	23,441,271
nssv1569973	Submitted genomic		NC_000013.9:g.(223 10923_22320522)_(2 2333062_22339271)d el	NCBI36 (hg18)		NC_000013.9	Chr13	22,310,923	22,320,522	22,333,062	22,339,271
nssv1570249	Submitted genomic		NC_000013.9:g.(223 10923_22320522)_(2 2333062_22339271)d el	NCBI36 (hg18)		NC_000013.9	Chr13	22,310,923	22,320,522	22,333,062	22,339,271
nssv1574613	Submitted genomic		NC_000013.9:g.(223 10923_22320522)_(2 2333062_22339271)d el	NCBI36 (hg18)		NC_000013.9	Chr13	22,310,923	22,320,522	22,333,062	22,339,271
nssv1574744	Submitted genomic		NC_000013.9:g.(223 10923_22320522)_(2 2333062_22339271)d el	NCBI36 (hg18)		NC_000013.9	Chr13	22,310,923	22,320,522	22,333,062	22,339,271
nssv1588046	Submitted genomic		NC_000013.9:g.(223 10923_22320522)_(2 2333062_22339271)d el	NCBI36 (hg18)		NC_000013.9	Chr13	22,310,923	22,320,522	22,333,062	22,339,271

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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