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dbVar

Database of genomic structural variation

nsv900070

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:73,521

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 492 SVs from 60 studies. See in: genome view

Remapped(Score: Perfect):49,439,486-49,513,006

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv900070	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	49,439,486	49,468,847	49,512,130	49,513,006
nsv900070	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000013.10	Chr13	50,013,622	50,042,983	50,086,266	50,087,142
nsv900070	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000013.9	Chr13	48,911,623	48,940,984	48,984,267	48,985,143

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1566033	copy number loss	IS30562	SNP array	SNP genotyping analysis	16
nssv1579926	copy number loss	IS35189	SNP array	SNP genotyping analysis	30

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1566033	Remapped	Perfect	NC_000013.11:g.(49 439486_49468847)_( 49512130_49513006) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	49,439,486	49,468,847	49,512,130	49,513,006
nssv1579926	Remapped	Perfect	NC_000013.11:g.(49 439486_49468847)_( 49512130_49513006) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	49,439,486	49,468,847	49,512,130	49,513,006
nssv1566033	Remapped	Perfect	NC_000013.10:g.(50 013622_50042983)_( 50086266_50087142) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	50,013,622	50,042,983	50,086,266	50,087,142
nssv1579926	Remapped	Perfect	NC_000013.10:g.(50 013622_50042983)_( 50086266_50087142) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	50,013,622	50,042,983	50,086,266	50,087,142
nssv1566033	Submitted genomic		NC_000013.9:g.(489 11623_48940984)_(4 8984267_48985143)d el	NCBI36 (hg18)		NC_000013.9	Chr13	48,911,623	48,940,984	48,984,267	48,985,143
nssv1579926	Submitted genomic		NC_000013.9:g.(489 11623_48940984)_(4 8984267_48985143)d el	NCBI36 (hg18)		NC_000013.9	Chr13	48,911,623	48,940,984	48,984,267	48,985,143

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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