nsv900155
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:20
- Validation:Not tested
- Clinical Assertions: No
- Region Size:86,375
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1349 SVs from 103 studies. See in: genome view
Overlapping variant regions from other studies: 1349 SVs from 103 studies. See in: genome view
Overlapping variant regions from other studies: 639 SVs from 35 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv900155 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nsv900155 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nsv900155 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1522128 | copy number loss | SP52734 | SNP array | SNP genotyping analysis | 9 |
| nssv1522427 | copy number loss | SP53051 | SNP array | SNP genotyping analysis | 15 |
| nssv1522459 | copy number loss | SP53131 | SNP array | SNP genotyping analysis | 11 |
| nssv1522882 | copy number loss | SP53491 | SNP array | SNP genotyping analysis | 16 |
| nssv1522904 | copy number loss | SP53503 | SNP array | SNP genotyping analysis | 12 |
| nssv1523193 | copy number loss | SP53759 | SNP array | SNP genotyping analysis | 14 |
| nssv1523629 | copy number loss | SP54118 | SNP array | SNP genotyping analysis | 15 |
| nssv1523698 | copy number loss | SP54148 | SNP array | SNP genotyping analysis | 12 |
| nssv1524515 | copy number loss | SP55075 | SNP array | SNP genotyping analysis | 8 |
| nssv1524843 | copy number loss | SP55339 | SNP array | SNP genotyping analysis | 13 |
| nssv1525634 | copy number loss | SP56748 | SNP array | SNP genotyping analysis | 9 |
| nssv1526236 | copy number loss | SP57137 | SNP array | SNP genotyping analysis | 12 |
| nssv1526767 | copy number loss | SP57789 | SNP array | SNP genotyping analysis | 11 |
| nssv1527067 | copy number loss | SP58108 | SNP array | SNP genotyping analysis | 8 |
| nssv1527524 | copy number loss | SP58505 | SNP array | SNP genotyping analysis | 13 |
| nssv1527739 | copy number loss | SP80961 | SNP array | SNP genotyping analysis | 9 |
| nssv1528413 | copy number loss | SP81226 | SNP array | SNP genotyping analysis | 9 |
| nssv1529060 | copy number loss | SP81437 | SNP array | SNP genotyping analysis | 13 |
| nssv1544938 | copy number loss | MS16607 | SNP array | SNP genotyping analysis | 17 |
| nssv1561886 | copy number loss | MS25280 | SNP array | SNP genotyping analysis | 10 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1522128 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1522427 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1522459 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1522882 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1522904 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1523193 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1523629 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1523698 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1524515 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1524843 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1525634 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1526236 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1526767 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1527067 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1527524 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1527739 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1528413 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1529060 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1544938 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1561886 | Remapped | Perfect | NC_000013.11:g.(57 166649_57174660)_( 57250022_57253023) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 57,166,649 | 57,174,660 | 57,250,022 | 57,253,023 |
| nssv1522128 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1522427 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1522459 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1522882 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1522904 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1523193 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1523629 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1523698 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1524515 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1524843 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1525634 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1526236 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1526767 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1527067 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1527524 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1527739 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1528413 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1529060 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1544938 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1561886 | Remapped | Perfect | NC_000013.10:g.(57 740783_57748794)_( 57824156_57827157) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,740,783 | 57,748,794 | 57,824,156 | 57,827,157 |
| nssv1522128 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1522427 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1522459 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1522882 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1522904 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1523193 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1523629 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1523698 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1524515 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1524843 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1525634 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1526236 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1526767 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1527067 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1527524 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1527739 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1528413 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1529060 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1544938 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 | ||
| nssv1561886 | Submitted genomic | NC_000013.9:g.(566 38784_56646795)_(5 6722157_56725158)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 56,638,784 | 56,646,795 | 56,722,157 | 56,725,158 |