nsv900263
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:79,340
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 451 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 451 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 160 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv900263 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 62,623,704 | 62,631,934 | 62,689,787 | 62,703,043 |
| nsv900263 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 63,197,837 | 63,206,067 | 63,263,920 | 63,277,176 |
| nsv900263 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000013.9 | Chr13 | 62,095,838 | 62,104,068 | 62,161,921 | 62,175,177 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1536548 | copy number loss | MS12827 | SNP array | SNP genotyping analysis | 60 |
| nssv1562514 | copy number loss | MS25617 | SNP array | SNP genotyping analysis | 63 |
| nssv1567599 | copy number loss | IS31123 | SNP array | SNP genotyping analysis | 37 |
| nssv1569232 | copy number loss | IS31553 | SNP array | SNP genotyping analysis | 25 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1536548 | Remapped | Perfect | NC_000013.11:g.(62 623704_62631934)_( 62689787_62703043) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 62,623,704 | 62,631,934 | 62,689,787 | 62,703,043 |
| nssv1562514 | Remapped | Perfect | NC_000013.11:g.(62 623704_62631934)_( 62689787_62703043) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 62,623,704 | 62,631,934 | 62,689,787 | 62,703,043 |
| nssv1567599 | Remapped | Perfect | NC_000013.11:g.(62 623704_62631934)_( 62689787_62703043) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 62,623,704 | 62,631,934 | 62,689,787 | 62,703,043 |
| nssv1569232 | Remapped | Perfect | NC_000013.11:g.(62 623704_62631934)_( 62689787_62703043) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 62,623,704 | 62,631,934 | 62,689,787 | 62,703,043 |
| nssv1536548 | Remapped | Perfect | NC_000013.10:g.(63 197837_63206067)_( 63263920_63277176) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 63,197,837 | 63,206,067 | 63,263,920 | 63,277,176 |
| nssv1562514 | Remapped | Perfect | NC_000013.10:g.(63 197837_63206067)_( 63263920_63277176) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 63,197,837 | 63,206,067 | 63,263,920 | 63,277,176 |
| nssv1567599 | Remapped | Perfect | NC_000013.10:g.(63 197837_63206067)_( 63263920_63277176) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 63,197,837 | 63,206,067 | 63,263,920 | 63,277,176 |
| nssv1569232 | Remapped | Perfect | NC_000013.10:g.(63 197837_63206067)_( 63263920_63277176) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 63,197,837 | 63,206,067 | 63,263,920 | 63,277,176 |
| nssv1536548 | Submitted genomic | NC_000013.9:g.(620 95838_62104068)_(6 2161921_62175177)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 62,095,838 | 62,104,068 | 62,161,921 | 62,175,177 | ||
| nssv1562514 | Submitted genomic | NC_000013.9:g.(620 95838_62104068)_(6 2161921_62175177)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 62,095,838 | 62,104,068 | 62,161,921 | 62,175,177 | ||
| nssv1567599 | Submitted genomic | NC_000013.9:g.(620 95838_62104068)_(6 2161921_62175177)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 62,095,838 | 62,104,068 | 62,161,921 | 62,175,177 | ||
| nssv1569232 | Submitted genomic | NC_000013.9:g.(620 95838_62104068)_(6 2161921_62175177)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 62,095,838 | 62,104,068 | 62,161,921 | 62,175,177 |