Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv900338

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:201,656

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 823 SVs from 69 studies. See in: genome view

Remapped(Score: Perfect):64,081,079-64,282,734

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv900338	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	64,081,079	64,081,079	64,282,734	64,282,734
nsv900338	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000013.10	Chr13	64,655,212	64,662,462	64,850,573	64,856,866
nsv900338	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000013.9	Chr13	63,553,213	63,560,463	63,748,574	63,754,867

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1536774	copy number loss	MS12947	SNP array	SNP genotyping analysis	22
nssv1542126	copy number loss	MS15672	SNP array	SNP genotyping analysis	15
nssv1557767	copy number loss	MS22858	SNP array	SNP genotyping analysis	30

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1536774	Remapped	Perfect	NC_000013.11:g.(64 081079_64081079)_( 64282734_64282734) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	64,081,079	64,081,079	64,282,734	64,282,734
nssv1542126	Remapped	Perfect	NC_000013.11:g.(64 081079_64081079)_( 64282734_64282734) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	64,081,079	64,081,079	64,282,734	64,282,734
nssv1557767	Remapped	Perfect	NC_000013.11:g.(64 081079_64081079)_( 64282734_64282734) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	64,081,079	64,081,079	64,282,734	64,282,734
nssv1536774	Remapped	Perfect	NC_000013.10:g.(64 655212_64662462)_( 64850573_64856866) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	64,655,212	64,662,462	64,850,573	64,856,866
nssv1542126	Remapped	Perfect	NC_000013.10:g.(64 655212_64662462)_( 64850573_64856866) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	64,655,212	64,662,462	64,850,573	64,856,866
nssv1557767	Remapped	Perfect	NC_000013.10:g.(64 655212_64662462)_( 64850573_64856866) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	64,655,212	64,662,462	64,850,573	64,856,866
nssv1536774	Submitted genomic		NC_000013.9:g.(635 53213_63560463)_(6 3748574_63754867)d el	NCBI36 (hg18)		NC_000013.9	Chr13	63,553,213	63,560,463	63,748,574	63,754,867
nssv1542126	Submitted genomic		NC_000013.9:g.(635 53213_63560463)_(6 3748574_63754867)d el	NCBI36 (hg18)		NC_000013.9	Chr13	63,553,213	63,560,463	63,748,574	63,754,867
nssv1557767	Submitted genomic		NC_000013.9:g.(635 53213_63560463)_(6 3748574_63754867)d el	NCBI36 (hg18)		NC_000013.9	Chr13	63,553,213	63,560,463	63,748,574	63,754,867

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI