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dbVar

Database of genomic structural variation

nsv900525

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:136,488

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 557 SVs from 54 studies. See in: genome view

Remapped(Score: Perfect):71,492,473-71,628,960

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv900525	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	71,492,473	71,517,731	71,622,849	71,628,960
nsv900525	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000013.10	Chr13	72,066,605	72,091,863	72,196,981	72,203,092
nsv900525	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000013.9	Chr13	70,964,606	70,989,864	71,094,982	71,101,093

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1522022	copy number loss	SP52694	SNP array	SNP genotyping analysis	43
nssv1597520	copy number gain	IS41340	SNP array	SNP genotyping analysis	16

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1522022	Remapped	Perfect	NC_000013.11:g.(71 492473_71517731)_( 71622849_71628960) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	71,492,473	71,517,731	71,622,849	71,628,960
nssv1597520	Remapped	Perfect	NC_000013.11:g.(71 492473_71517731)_( 71622849_71628960) dup	GRCh38.p12	First Pass	NC_000013.11	Chr13	71,492,473	71,517,731	71,622,849	71,628,960
nssv1522022	Remapped	Perfect	NC_000013.10:g.(72 066605_72091863)_( 72196981_72203092) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	72,066,605	72,091,863	72,196,981	72,203,092
nssv1597520	Remapped	Perfect	NC_000013.10:g.(72 066605_72091863)_( 72196981_72203092) dup	GRCh37.p13	First Pass	NC_000013.10	Chr13	72,066,605	72,091,863	72,196,981	72,203,092
nssv1522022	Submitted genomic		NC_000013.9:g.(709 64606_70989864)_(7 1094982_71101093)d el	NCBI36 (hg18)		NC_000013.9	Chr13	70,964,606	70,989,864	71,094,982	71,101,093
nssv1597520	Submitted genomic		NC_000013.9:g.(709 64606_70989864)_(7 1094982_71101093)d up	NCBI36 (hg18)		NC_000013.9	Chr13	70,964,606	70,989,864	71,094,982	71,101,093

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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