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dbVar

Database of genomic structural variation

nsv900542

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:147,779

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 576 SVs from 57 studies. See in: genome view

Remapped(Score: Perfect):71,527,229-71,675,007

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv900542	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	71,527,229	71,551,509	71,666,431	71,675,007
nsv900542	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000013.10	Chr13	72,101,361	72,125,641	72,240,563	72,249,139
nsv900542	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000013.9	Chr13	70,999,362	71,023,642	71,138,564	71,147,140

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1531648	copy number loss	MS10580	SNP array	SNP genotyping analysis	13
nssv1534582	copy number loss	MS11669	SNP array	SNP genotyping analysis	42
nssv1567209	copy number loss	IS31046	SNP array	SNP genotyping analysis	49

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1531648	Remapped	Perfect	NC_000013.11:g.(71 527229_71551509)_( 71666431_71675007) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	71,527,229	71,551,509	71,666,431	71,675,007
nssv1534582	Remapped	Perfect	NC_000013.11:g.(71 527229_71551509)_( 71666431_71675007) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	71,527,229	71,551,509	71,666,431	71,675,007
nssv1567209	Remapped	Perfect	NC_000013.11:g.(71 527229_71551509)_( 71666431_71675007) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	71,527,229	71,551,509	71,666,431	71,675,007
nssv1531648	Remapped	Perfect	NC_000013.10:g.(72 101361_72125641)_( 72240563_72249139) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	72,101,361	72,125,641	72,240,563	72,249,139
nssv1534582	Remapped	Perfect	NC_000013.10:g.(72 101361_72125641)_( 72240563_72249139) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	72,101,361	72,125,641	72,240,563	72,249,139
nssv1567209	Remapped	Perfect	NC_000013.10:g.(72 101361_72125641)_( 72240563_72249139) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	72,101,361	72,125,641	72,240,563	72,249,139
nssv1531648	Submitted genomic		NC_000013.9:g.(709 99362_71023642)_(7 1138564_71147140)d el	NCBI36 (hg18)		NC_000013.9	Chr13	70,999,362	71,023,642	71,138,564	71,147,140
nssv1534582	Submitted genomic		NC_000013.9:g.(709 99362_71023642)_(7 1138564_71147140)d el	NCBI36 (hg18)		NC_000013.9	Chr13	70,999,362	71,023,642	71,138,564	71,147,140
nssv1567209	Submitted genomic		NC_000013.9:g.(709 99362_71023642)_(7 1138564_71147140)d el	NCBI36 (hg18)		NC_000013.9	Chr13	70,999,362	71,023,642	71,138,564	71,147,140

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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