nsv900621
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:446,541
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1249 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 1249 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 432 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv900621 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 82,014,391 | 82,031,535 | 82,445,640 | 82,460,931 |
| nsv900621 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 82,588,526 | 82,605,670 | 83,019,775 | 83,035,066 |
| nsv900621 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000013.9 | Chr13 | 81,486,527 | 81,503,671 | 81,917,776 | 81,933,067 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1567404 | copy number loss | IS31074 | SNP array | SNP genotyping analysis | 39 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1567404 | Remapped | Perfect | NC_000013.11:g.(82 014391_82031535)_( 82445640_82460931) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 82,014,391 | 82,031,535 | 82,445,640 | 82,460,931 |
| nssv1567404 | Remapped | Perfect | NC_000013.10:g.(82 588526_82605670)_( 83019775_83035066) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 82,588,526 | 82,605,670 | 83,019,775 | 83,035,066 |
| nssv1567404 | Submitted genomic | NC_000013.9:g.(814 86527_81503671)_(8 1917776_81933067)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 81,486,527 | 81,503,671 | 81,917,776 | 81,933,067 |