nsv900623
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:534,280
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1801 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 1801 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 648 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv900623 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 82,075,298 | 82,118,153 | 82,589,782 | 82,609,577 |
| nsv900623 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 82,649,433 | 82,692,288 | 83,163,917 | 83,183,712 |
| nsv900623 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000013.9 | Chr13 | 81,547,434 | 81,590,289 | 82,061,918 | 82,081,713 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1587572 | copy number loss | IS38065 | SNP array | SNP genotyping analysis | 44 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1587572 | Remapped | Perfect | NC_000013.11:g.(82 075298_82118153)_( 82589782_82609577) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 82,075,298 | 82,118,153 | 82,589,782 | 82,609,577 |
| nssv1587572 | Remapped | Perfect | NC_000013.10:g.(82 649433_82692288)_( 83163917_83183712) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 82,649,433 | 82,692,288 | 83,163,917 | 83,183,712 |
| nssv1587572 | Submitted genomic | NC_000013.9:g.(815 47434_81590289)_(8 2061918_82081713)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 81,547,434 | 81,590,289 | 82,061,918 | 82,081,713 |