nsv900668
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:577,663
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1865 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 1865 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 593 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv900668 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 82,937,410 | 82,951,672 | 83,501,934 | 83,515,072 |
| nsv900668 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 83,511,545 | 83,525,807 | 84,076,069 | 84,089,207 |
| nsv900668 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000013.9 | Chr13 | 82,409,546 | 82,423,808 | 82,974,070 | 82,987,208 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1579326 | copy number loss | IS35083 | SNP array | SNP genotyping analysis | 97 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1579326 | Remapped | Perfect | NC_000013.11:g.(82 937410_82951672)_( 83501934_83515072) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 82,937,410 | 82,951,672 | 83,501,934 | 83,515,072 |
| nssv1579326 | Remapped | Perfect | NC_000013.10:g.(83 511545_83525807)_( 84076069_84089207) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 83,511,545 | 83,525,807 | 84,076,069 | 84,089,207 |
| nssv1579326 | Submitted genomic | NC_000013.9:g.(824 09546_82423808)_(8 2974070_82987208)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 82,409,546 | 82,423,808 | 82,974,070 | 82,987,208 |