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dbVar

Database of genomic structural variation

nsv900838

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:59,893

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 395 SVs from 53 studies. See in: genome view

Remapped(Score: Perfect):88,858,076-88,917,968

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv900838	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	88,858,076	88,859,658	88,912,396	88,917,968
nsv900838	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000013.10	Chr13	89,510,330	89,511,912	89,564,650	89,570,222
nsv900838	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000013.9	Chr13	88,308,331	88,309,913	88,362,651	88,368,223

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1567988	copy number loss	IS31179	SNP array	SNP genotyping analysis	81
nssv1568703	copy number loss	IS31330	SNP array	SNP genotyping analysis	66
nssv1583258	copy number gain	IS36364	SNP array	SNP genotyping analysis	27
nssv1598875	copy number loss	IS41224	SNP array	SNP genotyping analysis	51
nssv1600641	copy number gain	IS41906	SNP array	SNP genotyping analysis	21

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1567988	Remapped	Perfect	NC_000013.11:g.(88 858076_88859658)_( 88912396_88917968) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	88,858,076	88,859,658	88,912,396	88,917,968
nssv1568703	Remapped	Perfect	NC_000013.11:g.(88 858076_88859658)_( 88912396_88917968) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	88,858,076	88,859,658	88,912,396	88,917,968
nssv1583258	Remapped	Perfect	NC_000013.11:g.(88 858076_88859658)_( 88912396_88917968) dup	GRCh38.p12	First Pass	NC_000013.11	Chr13	88,858,076	88,859,658	88,912,396	88,917,968
nssv1598875	Remapped	Perfect	NC_000013.11:g.(88 858076_88859658)_( 88912396_88917968) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	88,858,076	88,859,658	88,912,396	88,917,968
nssv1600641	Remapped	Perfect	NC_000013.11:g.(88 858076_88859658)_( 88912396_88917968) dup	GRCh38.p12	First Pass	NC_000013.11	Chr13	88,858,076	88,859,658	88,912,396	88,917,968
nssv1567988	Remapped	Perfect	NC_000013.10:g.(89 510330_89511912)_( 89564650_89570222) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	89,510,330	89,511,912	89,564,650	89,570,222
nssv1568703	Remapped	Perfect	NC_000013.10:g.(89 510330_89511912)_( 89564650_89570222) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	89,510,330	89,511,912	89,564,650	89,570,222
nssv1583258	Remapped	Perfect	NC_000013.10:g.(89 510330_89511912)_( 89564650_89570222) dup	GRCh37.p13	First Pass	NC_000013.10	Chr13	89,510,330	89,511,912	89,564,650	89,570,222
nssv1598875	Remapped	Perfect	NC_000013.10:g.(89 510330_89511912)_( 89564650_89570222) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	89,510,330	89,511,912	89,564,650	89,570,222
nssv1600641	Remapped	Perfect	NC_000013.10:g.(89 510330_89511912)_( 89564650_89570222) dup	GRCh37.p13	First Pass	NC_000013.10	Chr13	89,510,330	89,511,912	89,564,650	89,570,222
nssv1567988	Submitted genomic		NC_000013.9:g.(883 08331_88309913)_(8 8362651_88368223)d el	NCBI36 (hg18)		NC_000013.9	Chr13	88,308,331	88,309,913	88,362,651	88,368,223
nssv1568703	Submitted genomic		NC_000013.9:g.(883 08331_88309913)_(8 8362651_88368223)d el	NCBI36 (hg18)		NC_000013.9	Chr13	88,308,331	88,309,913	88,362,651	88,368,223
nssv1583258	Submitted genomic		NC_000013.9:g.(883 08331_88309913)_(8 8362651_88368223)d up	NCBI36 (hg18)		NC_000013.9	Chr13	88,308,331	88,309,913	88,362,651	88,368,223
nssv1598875	Submitted genomic		NC_000013.9:g.(883 08331_88309913)_(8 8362651_88368223)d el	NCBI36 (hg18)		NC_000013.9	Chr13	88,308,331	88,309,913	88,362,651	88,368,223
nssv1600641	Submitted genomic		NC_000013.9:g.(883 08331_88309913)_(8 8362651_88368223)d up	NCBI36 (hg18)		NC_000013.9	Chr13	88,308,331	88,309,913	88,362,651	88,368,223

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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