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dbVar

Database of genomic structural variation

nsv901163

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:35,366

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 631 SVs from 56 studies. See in: genome view

Remapped(Score: Pass):18,907,993-18,943,358

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv901163	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000014.9	Chr14	-	18,907,993	18,940,270	18,943,358
nsv901163	Remapped	Good	GRCh37.p13	Primary Assembly	First Pass	NC_000014.8	Chr14	20,044,348	20,044,348	20,096,940	20,096,940
nsv901163	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000014.7	Chr14	19,114,348	19,117,436	19,154,003	19,166,663

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1572506	copy number gain	IS33087	SNP array	SNP genotyping analysis	13
nssv1586467	copy number loss	IS37820	SNP array	SNP genotyping analysis	11
nssv1590085	copy number gain	IS38457	SNP array	SNP genotyping analysis	12

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1572506	Remapped	Pass	NC_000014.9:g.(?_1 8907993)_(18940270 _18943358)dup	GRCh38.p12	First Pass	NC_000014.9	Chr14	-	18,907,993	18,940,270	18,943,358
nssv1586467	Remapped	Pass	NC_000014.9:g.(?_1 8907993)_(18940270 _18943358)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	-	18,907,993	18,940,270	18,943,358
nssv1590085	Remapped	Pass	NC_000014.9:g.(?_1 8907993)_(18940270 _18943358)dup	GRCh38.p12	First Pass	NC_000014.9	Chr14	-	18,907,993	18,940,270	18,943,358
nssv1572506	Remapped	Good	NC_000014.8:g.(200 44348_20044348)_(2 0096940_20096940)d up	GRCh37.p13	First Pass	NC_000014.8	Chr14	20,044,348	20,044,348	20,096,940	20,096,940
nssv1586467	Remapped	Good	NC_000014.8:g.(200 44348_20044348)_(2 0096940_20096940)d el	GRCh37.p13	First Pass	NC_000014.8	Chr14	20,044,348	20,044,348	20,096,940	20,096,940
nssv1590085	Remapped	Good	NC_000014.8:g.(200 44348_20044348)_(2 0096940_20096940)d up	GRCh37.p13	First Pass	NC_000014.8	Chr14	20,044,348	20,044,348	20,096,940	20,096,940
nssv1572506	Submitted genomic		NC_000014.7:g.(191 14348_19117436)_(1 9154003_19166663)d up	NCBI36 (hg18)		NC_000014.7	Chr14	19,114,348	19,117,436	19,154,003	19,166,663
nssv1586467	Submitted genomic		NC_000014.7:g.(191 14348_19117436)_(1 9154003_19166663)d el	NCBI36 (hg18)		NC_000014.7	Chr14	19,114,348	19,117,436	19,154,003	19,166,663
nssv1590085	Submitted genomic		NC_000014.7:g.(191 14348_19117436)_(1 9154003_19166663)d up	NCBI36 (hg18)		NC_000014.7	Chr14	19,114,348	19,117,436	19,154,003	19,166,663

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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