nsv901403
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:20
- Validation:Not tested
- Clinical Assertions: No
- Region Size:158,038
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2552 SVs from 104 studies. See in: genome view
Overlapping variant regions from other studies: 2687 SVs from 104 studies. See in: genome view
Overlapping variant regions from other studies: 1283 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv901403 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nsv901403 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nsv901403 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1520557 | copy number gain | SP51142 | SNP array | SNP genotyping analysis | 7 |
| nssv1524664 | copy number gain | SP55150 | SNP array | SNP genotyping analysis | 8 |
| nssv1532097 | copy number gain | MS10714 | SNP array | SNP genotyping analysis | 10 |
| nssv1544758 | copy number gain | MS16471 | SNP array | SNP genotyping analysis | 8 |
| nssv1545693 | copy number gain | MS16902 | SNP array | SNP genotyping analysis | 16 |
| nssv1545782 | copy number gain | MS16944 | SNP array | SNP genotyping analysis | 14 |
| nssv1550721 | copy number gain | MS18553 | SNP array | SNP genotyping analysis | 7 |
| nssv1557832 | copy number gain | MS22928 | SNP array | SNP genotyping analysis | 14 |
| nssv1561244 | copy number gain | MS24888 | SNP array | SNP genotyping analysis | 9 |
| nssv1564102 | copy number gain | IS30165 | SNP array | SNP genotyping analysis | 13 |
| nssv1564195 | copy number gain | IS30178 | SNP array | SNP genotyping analysis | 14 |
| nssv1571433 | copy number gain | IS32736 | SNP array | SNP genotyping analysis | 11 |
| nssv1572507 | copy number gain | IS33087 | SNP array | SNP genotyping analysis | 13 |
| nssv1587378 | copy number gain | IS38030 | SNP array | SNP genotyping analysis | 14 |
| nssv1588327 | copy number gain | IS38180 | SNP array | SNP genotyping analysis | 8 |
| nssv1588800 | copy number gain | IS38251 | SNP array | SNP genotyping analysis | 11 |
| nssv1589281 | copy number gain | IS38333 | SNP array | SNP genotyping analysis | 19 |
| nssv1597113 | copy number gain | IS40737 | SNP array | SNP genotyping analysis | 7 |
| nssv1598830 | copy number gain | IS41192 | SNP array | SNP genotyping analysis | 10 |
| nssv1599644 | copy number gain | IS41739 | SNP array | SNP genotyping analysis | 15 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1520557 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1524664 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1532097 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1544758 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1545693 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1545782 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1550721 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1557832 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1561244 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1564102 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1564195 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1571433 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1572507 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1587378 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1588327 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1588800 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1589281 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1597113 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1598830 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1599644 | Remapped | Perfect | NC_000014.9:g.(197 98855_19812854)_(1 9955706_19956892)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 19,798,855 | 19,812,854 | 19,955,706 | 19,956,892 |
| nssv1520557 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1524664 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1532097 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1544758 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1545693 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1545782 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1550721 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1557832 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1561244 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1564102 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1564195 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1571433 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1572507 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1587378 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1588327 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1588800 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1589281 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1597113 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1598830 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1599644 | Remapped | Perfect | NC_000014.8:g.(202 67014_20281013)_(2 0423865_20425051)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 20,267,014 | 20,281,013 | 20,423,865 | 20,425,051 |
| nssv1520557 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1524664 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1532097 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1544758 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1545693 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1545782 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1550721 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1557832 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1561244 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1564102 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1564195 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1571433 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1572507 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1587378 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1588327 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1588800 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1589281 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1597113 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1598830 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 | ||
| nssv1599644 | Submitted genomic | NC_000014.7:g.(193 36854_19350853)_(1 9493705_19494891)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 19,336,854 | 19,350,853 | 19,493,705 | 19,494,891 |