nsv901920
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:13,911
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 153 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 153 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 35 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv901920 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 47,996,635 | 47,997,234 | 48,010,313 | 48,010,545 |
| nsv901920 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000014.8 | Chr14 | 48,465,838 | 48,466,437 | 48,479,516 | 48,479,748 |
| nsv901920 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000014.7 | Chr14 | 47,535,588 | 47,536,187 | 47,549,266 | 47,549,498 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1532834 | copy number gain | MS10871 | SNP array | SNP genotyping analysis | 19 |
| nssv1542940 | copy number gain | MS15972 | SNP array | SNP genotyping analysis | 12 |
| nssv1547230 | copy number gain | MS17237 | SNP array | SNP genotyping analysis | 6 |
| nssv1547710 | copy number gain | MS17522 | SNP array | SNP genotyping analysis | 46 |
| nssv1549523 | copy number gain | MS18256 | SNP array | SNP genotyping analysis | 8 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1532834 | Remapped | Perfect | NC_000014.9:g.(479 96635_47997234)_(4 8010313_48010545)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 47,996,635 | 47,997,234 | 48,010,313 | 48,010,545 |
| nssv1542940 | Remapped | Perfect | NC_000014.9:g.(479 96635_47997234)_(4 8010313_48010545)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 47,996,635 | 47,997,234 | 48,010,313 | 48,010,545 |
| nssv1547230 | Remapped | Perfect | NC_000014.9:g.(479 96635_47997234)_(4 8010313_48010545)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 47,996,635 | 47,997,234 | 48,010,313 | 48,010,545 |
| nssv1547710 | Remapped | Perfect | NC_000014.9:g.(479 96635_47997234)_(4 8010313_48010545)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 47,996,635 | 47,997,234 | 48,010,313 | 48,010,545 |
| nssv1549523 | Remapped | Perfect | NC_000014.9:g.(479 96635_47997234)_(4 8010313_48010545)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 47,996,635 | 47,997,234 | 48,010,313 | 48,010,545 |
| nssv1532834 | Remapped | Perfect | NC_000014.8:g.(484 65838_48466437)_(4 8479516_48479748)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 48,465,838 | 48,466,437 | 48,479,516 | 48,479,748 |
| nssv1542940 | Remapped | Perfect | NC_000014.8:g.(484 65838_48466437)_(4 8479516_48479748)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 48,465,838 | 48,466,437 | 48,479,516 | 48,479,748 |
| nssv1547230 | Remapped | Perfect | NC_000014.8:g.(484 65838_48466437)_(4 8479516_48479748)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 48,465,838 | 48,466,437 | 48,479,516 | 48,479,748 |
| nssv1547710 | Remapped | Perfect | NC_000014.8:g.(484 65838_48466437)_(4 8479516_48479748)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 48,465,838 | 48,466,437 | 48,479,516 | 48,479,748 |
| nssv1549523 | Remapped | Perfect | NC_000014.8:g.(484 65838_48466437)_(4 8479516_48479748)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 48,465,838 | 48,466,437 | 48,479,516 | 48,479,748 |
| nssv1532834 | Submitted genomic | NC_000014.7:g.(475 35588_47536187)_(4 7549266_47549498)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 47,535,588 | 47,536,187 | 47,549,266 | 47,549,498 | ||
| nssv1542940 | Submitted genomic | NC_000014.7:g.(475 35588_47536187)_(4 7549266_47549498)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 47,535,588 | 47,536,187 | 47,549,266 | 47,549,498 | ||
| nssv1547230 | Submitted genomic | NC_000014.7:g.(475 35588_47536187)_(4 7549266_47549498)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 47,535,588 | 47,536,187 | 47,549,266 | 47,549,498 | ||
| nssv1547710 | Submitted genomic | NC_000014.7:g.(475 35588_47536187)_(4 7549266_47549498)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 47,535,588 | 47,536,187 | 47,549,266 | 47,549,498 | ||
| nssv1549523 | Submitted genomic | NC_000014.7:g.(475 35588_47536187)_(4 7549266_47549498)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 47,535,588 | 47,536,187 | 47,549,266 | 47,549,498 |