nsv901925
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:12,616
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 145 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 145 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 32 SVs from 11 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv901925 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 47,997,930 | 48,000,759 | 48,010,313 | 48,010,545 |
| nsv901925 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000014.8 | Chr14 | 48,467,133 | 48,469,962 | 48,479,516 | 48,479,748 |
| nsv901925 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000014.7 | Chr14 | 47,536,883 | 47,539,712 | 47,549,266 | 47,549,498 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1541487 | copy number gain | MS15337 | SNP array | SNP genotyping analysis | 10 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1541487 | Remapped | Perfect | NC_000014.9:g.(479 97930_48000759)_(4 8010313_48010545)d up | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 47,997,930 | 48,000,759 | 48,010,313 | 48,010,545 |
| nssv1541487 | Remapped | Perfect | NC_000014.8:g.(484 67133_48469962)_(4 8479516_48479748)d up | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 48,467,133 | 48,469,962 | 48,479,516 | 48,479,748 |
| nssv1541487 | Submitted genomic | NC_000014.7:g.(475 36883_47539712)_(4 7549266_47549498)d up | NCBI36 (hg18) | NC_000014.7 | Chr14 | 47,536,883 | 47,539,712 | 47,549,266 | 47,549,498 |