nsv902133
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:110,547
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 514 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 514 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 123 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv902133 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 83,096,497 | 83,099,879 | 83,198,767 | 83,207,043 |
| nsv902133 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000014.8 | Chr14 | 83,562,841 | 83,566,223 | 83,665,111 | 83,673,387 |
| nsv902133 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000014.7 | Chr14 | 82,632,594 | 82,635,976 | 82,734,864 | 82,743,140 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1533339 | copy number loss | MS11105 | SNP array | SNP genotyping analysis | 22 |
| nssv1551647 | copy number loss | MS18965 | SNP array | SNP genotyping analysis | 8 |
| nssv1554530 | copy number loss | MS20850 | SNP array | SNP genotyping analysis | 23 |
| nssv1555064 | copy number loss | MS21182 | SNP array | SNP genotyping analysis | 12 |
| nssv1555369 | copy number loss | MS21294 | SNP array | SNP genotyping analysis | 18 |
| nssv1558255 | copy number loss | MS23184 | SNP array | SNP genotyping analysis | 15 |
| nssv1565396 | copy number loss | IS30409 | SNP array | SNP genotyping analysis | 21 |
| nssv1598131 | copy number loss | IS40902 | SNP array | SNP genotyping analysis | 34 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1533339 | Remapped | Perfect | NC_000014.9:g.(830 96497_83099879)_(8 3198767_83207043)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 83,096,497 | 83,099,879 | 83,198,767 | 83,207,043 |
| nssv1551647 | Remapped | Perfect | NC_000014.9:g.(830 96497_83099879)_(8 3198767_83207043)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 83,096,497 | 83,099,879 | 83,198,767 | 83,207,043 |
| nssv1554530 | Remapped | Perfect | NC_000014.9:g.(830 96497_83099879)_(8 3198767_83207043)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 83,096,497 | 83,099,879 | 83,198,767 | 83,207,043 |
| nssv1555064 | Remapped | Perfect | NC_000014.9:g.(830 96497_83099879)_(8 3198767_83207043)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 83,096,497 | 83,099,879 | 83,198,767 | 83,207,043 |
| nssv1555369 | Remapped | Perfect | NC_000014.9:g.(830 96497_83099879)_(8 3198767_83207043)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 83,096,497 | 83,099,879 | 83,198,767 | 83,207,043 |
| nssv1558255 | Remapped | Perfect | NC_000014.9:g.(830 96497_83099879)_(8 3198767_83207043)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 83,096,497 | 83,099,879 | 83,198,767 | 83,207,043 |
| nssv1565396 | Remapped | Perfect | NC_000014.9:g.(830 96497_83099879)_(8 3198767_83207043)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 83,096,497 | 83,099,879 | 83,198,767 | 83,207,043 |
| nssv1598131 | Remapped | Perfect | NC_000014.9:g.(830 96497_83099879)_(8 3198767_83207043)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 83,096,497 | 83,099,879 | 83,198,767 | 83,207,043 |
| nssv1533339 | Remapped | Perfect | NC_000014.8:g.(835 62841_83566223)_(8 3665111_83673387)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 83,562,841 | 83,566,223 | 83,665,111 | 83,673,387 |
| nssv1551647 | Remapped | Perfect | NC_000014.8:g.(835 62841_83566223)_(8 3665111_83673387)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 83,562,841 | 83,566,223 | 83,665,111 | 83,673,387 |
| nssv1554530 | Remapped | Perfect | NC_000014.8:g.(835 62841_83566223)_(8 3665111_83673387)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 83,562,841 | 83,566,223 | 83,665,111 | 83,673,387 |
| nssv1555064 | Remapped | Perfect | NC_000014.8:g.(835 62841_83566223)_(8 3665111_83673387)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 83,562,841 | 83,566,223 | 83,665,111 | 83,673,387 |
| nssv1555369 | Remapped | Perfect | NC_000014.8:g.(835 62841_83566223)_(8 3665111_83673387)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 83,562,841 | 83,566,223 | 83,665,111 | 83,673,387 |
| nssv1558255 | Remapped | Perfect | NC_000014.8:g.(835 62841_83566223)_(8 3665111_83673387)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 83,562,841 | 83,566,223 | 83,665,111 | 83,673,387 |
| nssv1565396 | Remapped | Perfect | NC_000014.8:g.(835 62841_83566223)_(8 3665111_83673387)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 83,562,841 | 83,566,223 | 83,665,111 | 83,673,387 |
| nssv1598131 | Remapped | Perfect | NC_000014.8:g.(835 62841_83566223)_(8 3665111_83673387)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 83,562,841 | 83,566,223 | 83,665,111 | 83,673,387 |
| nssv1533339 | Submitted genomic | NC_000014.7:g.(826 32594_82635976)_(8 2734864_82743140)d el | NCBI36 (hg18) | NC_000014.7 | Chr14 | 82,632,594 | 82,635,976 | 82,734,864 | 82,743,140 | ||
| nssv1551647 | Submitted genomic | NC_000014.7:g.(826 32594_82635976)_(8 2734864_82743140)d el | NCBI36 (hg18) | NC_000014.7 | Chr14 | 82,632,594 | 82,635,976 | 82,734,864 | 82,743,140 | ||
| nssv1554530 | Submitted genomic | NC_000014.7:g.(826 32594_82635976)_(8 2734864_82743140)d el | NCBI36 (hg18) | NC_000014.7 | Chr14 | 82,632,594 | 82,635,976 | 82,734,864 | 82,743,140 | ||
| nssv1555064 | Submitted genomic | NC_000014.7:g.(826 32594_82635976)_(8 2734864_82743140)d el | NCBI36 (hg18) | NC_000014.7 | Chr14 | 82,632,594 | 82,635,976 | 82,734,864 | 82,743,140 | ||
| nssv1555369 | Submitted genomic | NC_000014.7:g.(826 32594_82635976)_(8 2734864_82743140)d el | NCBI36 (hg18) | NC_000014.7 | Chr14 | 82,632,594 | 82,635,976 | 82,734,864 | 82,743,140 | ||
| nssv1558255 | Submitted genomic | NC_000014.7:g.(826 32594_82635976)_(8 2734864_82743140)d el | NCBI36 (hg18) | NC_000014.7 | Chr14 | 82,632,594 | 82,635,976 | 82,734,864 | 82,743,140 | ||
| nssv1565396 | Submitted genomic | NC_000014.7:g.(826 32594_82635976)_(8 2734864_82743140)d el | NCBI36 (hg18) | NC_000014.7 | Chr14 | 82,632,594 | 82,635,976 | 82,734,864 | 82,743,140 | ||
| nssv1598131 | Submitted genomic | NC_000014.7:g.(826 32594_82635976)_(8 2734864_82743140)d el | NCBI36 (hg18) | NC_000014.7 | Chr14 | 82,632,594 | 82,635,976 | 82,734,864 | 82,743,140 |