nsv902599
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:738,368
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 4614 SVs from 104 studies. See in: genome view
Overlapping variant regions from other studies: 6160 SVs from 99 studies. See in: genome view
Overlapping variant regions from other studies: 4150 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 2259 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 2923 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv902599 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 105,992,229 | 105,992,229 | 106,207,924 | 106,207,924 |
| nsv902599 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | First Pass | NT_187600.1 | Chr14|NT_1 87600.1 | - | 475,711 | 1,214,078 | - |
| nsv902599 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000014.8 | Chr14 | 106,458,319 | 106,474,159 | 106,645,911 | 106,664,567 |
| nsv902599 | Remapped | Good | GRCh37.p13 | PATCHES | Second Pass | NW_004166863.1 | Chr14|NW_0 04166863.1 | 655,396 | 655,396 | 871,091 | 871,091 |
| nsv902599 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000014.7 | Chr14 | 105,529,364 | 105,545,204 | 105,716,956 | 105,735,612 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1557741 | copy number loss | MS22854 | SNP array | SNP genotyping analysis | 21 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1557741 | Remapped | Pass | NT_187600.1:g.(?_4 75711)_(1214078_?) del | GRCh38.p12 | First Pass | NT_187600.1 | Chr14|NT_1 87600.1 | - | 475,711 | 1,214,078 | - |
| nssv1557741 | Remapped | Good | NC_000014.9:g.(105 992229_105992229)_ (106207924_1062079 24)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 105,992,229 | 105,992,229 | 106,207,924 | 106,207,924 |
| nssv1557741 | Remapped | Good | NW_004166863.1:g.( 655396_655396)_(87 1091_871091)del | GRCh37.p13 | Second Pass | NW_004166863.1 | Chr14|NW_0 04166863.1 | 655,396 | 655,396 | 871,091 | 871,091 |
| nssv1557741 | Remapped | Perfect | NC_000014.8:g.(106 458319_106474159)_ (106645911_1066645 67)del | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 106,458,319 | 106,474,159 | 106,645,911 | 106,664,567 |
| nssv1557741 | Submitted genomic | NC_000014.7:g.(105 529364_105545204)_ (105716956_1057356 12)del | NCBI36 (hg18) | NC_000014.7 | Chr14 | 105,529,364 | 105,545,204 | 105,716,956 | 105,735,612 |