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dbVar

Database of genomic structural variation

nsv902704

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:135,846

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 4196 SVs from 100 studies. See in: genome view

Remapped(Score: Perfect):20,300,975-20,436,820

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv902704	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	20,300,975	20,323,416	20,421,874	20,436,820
nsv902704	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000015.9	Chr15	20,506,228	20,528,669	20,627,127	20,642,073
nsv902704	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000015.8	Chr15	18,766,242	18,788,683	18,887,141	18,902,087

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1508560	copy number loss	SP54725	SNP array	SNP genotyping analysis	317
nssv1515833	copy number gain	SP56289	SNP array	SNP genotyping analysis	34
nssv1516778	copy number gain	SP56927	SNP array	SNP genotyping analysis	27

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1508560	Remapped	Perfect	NC_000015.10:g.(20 300975_20323416)_( 20421874_20436820) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,300,975	20,323,416	20,421,874	20,436,820
nssv1515833	Remapped	Perfect	NC_000015.10:g.(20 300975_20323416)_( 20421874_20436820) dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,300,975	20,323,416	20,421,874	20,436,820
nssv1516778	Remapped	Perfect	NC_000015.10:g.(20 300975_20323416)_( 20421874_20436820) dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,300,975	20,323,416	20,421,874	20,436,820
nssv1508560	Remapped	Perfect	NC_000015.9:g.(205 06228_20528669)_(2 0627127_20642073)d el	GRCh37.p13	First Pass	NC_000015.9	Chr15	20,506,228	20,528,669	20,627,127	20,642,073
nssv1515833	Remapped	Perfect	NC_000015.9:g.(205 06228_20528669)_(2 0627127_20642073)d up	GRCh37.p13	First Pass	NC_000015.9	Chr15	20,506,228	20,528,669	20,627,127	20,642,073
nssv1516778	Remapped	Perfect	NC_000015.9:g.(205 06228_20528669)_(2 0627127_20642073)d up	GRCh37.p13	First Pass	NC_000015.9	Chr15	20,506,228	20,528,669	20,627,127	20,642,073
nssv1508560	Submitted genomic		NC_000015.8:g.(187 66242_18788683)_(1 8887141_18902087)d el	NCBI36 (hg18)		NC_000015.8	Chr15	18,766,242	18,788,683	18,887,141	18,902,087
nssv1515833	Submitted genomic		NC_000015.8:g.(187 66242_18788683)_(1 8887141_18902087)d up	NCBI36 (hg18)		NC_000015.8	Chr15	18,766,242	18,788,683	18,887,141	18,902,087
nssv1516778	Submitted genomic		NC_000015.8:g.(187 66242_18788683)_(1 8887141_18902087)d up	NCBI36 (hg18)		NC_000015.8	Chr15	18,766,242	18,788,683	18,887,141	18,902,087

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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