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dbVar

Database of genomic structural variation

nsv902732

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:123,650

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 3991 SVs from 97 studies. See in: genome view

Remapped(Score: Perfect):20,357,034-20,480,683

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv902732	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	20,357,034	20,367,552	20,475,477	20,480,683
nsv902732	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000015.9	Chr15	20,562,287	20,572,805	20,680,730	20,685,936
nsv902732	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000015.8	Chr15	18,822,301	18,832,819	18,940,744	18,945,950

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1551043	copy number loss	MS18747	SNP array	SNP genotyping analysis	13
nssv1591080	copy number gain	IS38633	SNP array	SNP genotyping analysis	11

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1551043	Remapped	Perfect	NC_000015.10:g.(20 357034_20367552)_( 20475477_20480683) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,357,034	20,367,552	20,475,477	20,480,683
nssv1591080	Remapped	Perfect	NC_000015.10:g.(20 357034_20367552)_( 20475477_20480683) dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,357,034	20,367,552	20,475,477	20,480,683
nssv1551043	Remapped	Perfect	NC_000015.9:g.(205 62287_20572805)_(2 0680730_20685936)d el	GRCh37.p13	First Pass	NC_000015.9	Chr15	20,562,287	20,572,805	20,680,730	20,685,936
nssv1591080	Remapped	Perfect	NC_000015.9:g.(205 62287_20572805)_(2 0680730_20685936)d up	GRCh37.p13	First Pass	NC_000015.9	Chr15	20,562,287	20,572,805	20,680,730	20,685,936
nssv1551043	Submitted genomic		NC_000015.8:g.(188 22301_18832819)_(1 8940744_18945950)d el	NCBI36 (hg18)		NC_000015.8	Chr15	18,822,301	18,832,819	18,940,744	18,945,950
nssv1591080	Submitted genomic		NC_000015.8:g.(188 22301_18832819)_(1 8940744_18945950)d up	NCBI36 (hg18)		NC_000015.8	Chr15	18,822,301	18,832,819	18,940,744	18,945,950

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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