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dbVar

Database of genomic structural variation

nsv902778

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:931,948

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 6706 SVs from 108 studies. See in: genome view

Remapped(Score: Pass):20,566,406-21,498,353

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv902778	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	20,566,406	20,566,406	21,498,353	-
nsv902778	Remapped	Pass	GRCh37.p13	Primary Assembly	First Pass	NC_000015.9	Chr15	20,771,729	20,771,729	22,141,158	-
nsv902778	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000015.8	Chr15	19,031,743	19,095,051	19,402,778	19,406,459

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1534368	copy number gain	MS11554	SNP array	SNP genotyping analysis	10
nssv1557855	copy number loss	MS22952	SNP array	SNP genotyping analysis	10
nssv1560894	copy number gain	MS24747	SNP array	SNP genotyping analysis	12
nssv1579333	copy number loss	IS35083	SNP array	SNP genotyping analysis	97

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1534368	Remapped	Pass	NC_000015.10:g.(20 566406_20566406)_( 21498353_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,566,406	20,566,406	21,498,353	-
nssv1557855	Remapped	Pass	NC_000015.10:g.(20 566406_20566406)_( 21498353_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,566,406	20,566,406	21,498,353	-
nssv1560894	Remapped	Pass	NC_000015.10:g.(20 566406_20566406)_( 21498353_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,566,406	20,566,406	21,498,353	-
nssv1579333	Remapped	Pass	NC_000015.10:g.(20 566406_20566406)_( 21498353_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,566,406	20,566,406	21,498,353	-
nssv1534368	Remapped	Pass	NC_000015.9:g.(207 71729_20771729)_(2 2141158_?)dup	GRCh37.p13	First Pass	NC_000015.9	Chr15	20,771,729	20,771,729	22,141,158	-
nssv1557855	Remapped	Pass	NC_000015.9:g.(207 71729_20771729)_(2 2141158_?)del	GRCh37.p13	First Pass	NC_000015.9	Chr15	20,771,729	20,771,729	22,141,158	-
nssv1560894	Remapped	Pass	NC_000015.9:g.(207 71729_20771729)_(2 2141158_?)dup	GRCh37.p13	First Pass	NC_000015.9	Chr15	20,771,729	20,771,729	22,141,158	-
nssv1579333	Remapped	Pass	NC_000015.9:g.(207 71729_20771729)_(2 2141158_?)del	GRCh37.p13	First Pass	NC_000015.9	Chr15	20,771,729	20,771,729	22,141,158	-
nssv1534368	Submitted genomic		NC_000015.8:g.(190 31743_19095051)_(1 9402778_19406459)d up	NCBI36 (hg18)		NC_000015.8	Chr15	19,031,743	19,095,051	19,402,778	19,406,459
nssv1557855	Submitted genomic		NC_000015.8:g.(190 31743_19095051)_(1 9402778_19406459)d el	NCBI36 (hg18)		NC_000015.8	Chr15	19,031,743	19,095,051	19,402,778	19,406,459
nssv1560894	Submitted genomic		NC_000015.8:g.(190 31743_19095051)_(1 9402778_19406459)d up	NCBI36 (hg18)		NC_000015.8	Chr15	19,031,743	19,095,051	19,402,778	19,406,459
nssv1579333	Submitted genomic		NC_000015.8:g.(190 31743_19095051)_(1 9402778_19406459)d el	NCBI36 (hg18)		NC_000015.8	Chr15	19,031,743	19,095,051	19,402,778	19,406,459

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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