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dbVar

Database of genomic structural variation

nsv902893

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:55,210

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 143 SVs from 23 studies. See in: genome view

Remapped(Score: Pass):1-55,210

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv902893	Remapped	Pass	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NT_187602.1	Chr15\|NT_1 87602.1	-	1	55,210	55,210
nsv902893	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000015.8	Chr15	19,128,174	19,142,068	19,191,595	19,193,604

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1502799	copy number gain	SP51413	SNP array	SNP genotyping analysis	14
nssv1503267	copy number gain	SP52019	SNP array	SNP genotyping analysis	22

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1502799	Remapped	Pass	NT_187602.1:g.(?_1 )_(55210_55210)dup	GRCh38.p12	Second Pass	NT_187602.1	Chr15\|NT_1 87602.1	-	1	55,210	55,210
nssv1503267	Remapped	Pass	NT_187602.1:g.(?_1 )_(55210_55210)dup	GRCh38.p12	Second Pass	NT_187602.1	Chr15\|NT_1 87602.1	-	1	55,210	55,210
nssv1502799	Submitted genomic		NC_000015.8:g.(191 28174_19142068)_(1 9191595_19193604)d up	NCBI36 (hg18)		NC_000015.8	Chr15	19,128,174	19,142,068	19,191,595	19,193,604
nssv1503267	Submitted genomic		NC_000015.8:g.(191 28174_19142068)_(1 9191595_19193604)d up	NCBI36 (hg18)		NC_000015.8	Chr15	19,128,174	19,142,068	19,191,595	19,193,604

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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