nsv902927
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:148,378
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 4292 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 4148 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 2850 SVs from 34 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv902927 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 21,261,879 | 21,261,879 | 21,410,256 | 21,410,256 |
| nsv902927 | Remapped | Good | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 21,904,789 | 21,904,789 | 22,053,149 | 22,053,149 |
| nsv902927 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 19,158,166 | 19,159,657 | 19,276,020 | 19,306,545 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1578160 | copy number gain | IS34698 | SNP array | SNP genotyping analysis | 14 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1578160 | Remapped | Good | NC_000015.10:g.(21 261879_21261879)_( 21410256_21410256) dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 21,261,879 | 21,261,879 | 21,410,256 | 21,410,256 |
| nssv1578160 | Remapped | Good | NC_000015.9:g.(219 04789_21904789)_(2 2053149_22053149)d up | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 21,904,789 | 21,904,789 | 22,053,149 | 22,053,149 |
| nssv1578160 | Submitted genomic | NC_000015.8:g.(191 58166_19159657)_(1 9276020_19306545)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,158,166 | 19,159,657 | 19,276,020 | 19,306,545 |