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dbVar

Database of genomic structural variation

nsv903065

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:65,777

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 91 SVs from 12 studies. See in: genome view

Remapped(Score: Good):172,363-238,139

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv903065	Remapped	Good	GRCh38.p12	Primary Assembly	Second Pass	NT_187382.1	Chr15\|NT_1 87382.1	172,363	172,363	238,139	238,139
nsv903065	Remapped	Good	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NT_187602.1	Chr15\|NT_1 87602.1	203,114	203,114	268,890	268,890
nsv903065	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000015.8	Chr15	19,341,464	19,359,417	19,406,459	19,407,285

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1535688	copy number gain	MS12387	SNP array	SNP genotyping analysis	14
nssv1565318	copy number gain	IS30389	SNP array	SNP genotyping analysis	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1535688	Remapped	Good	NT_187382.1:g.(172 363_172363)_(23813 9_238139)dup	GRCh38.p12	Second Pass	NT_187382.1	Chr15\|NT_1 87382.1	172,363	172,363	238,139	238,139
nssv1565318	Remapped	Good	NT_187382.1:g.(172 363_172363)_(23813 9_238139)dup	GRCh38.p12	Second Pass	NT_187382.1	Chr15\|NT_1 87382.1	172,363	172,363	238,139	238,139
nssv1535688	Remapped	Good	NT_187602.1:g.(203 114_203114)_(26889 0_268890)dup	GRCh38.p12	Second Pass	NT_187602.1	Chr15\|NT_1 87602.1	203,114	203,114	268,890	268,890
nssv1565318	Remapped	Good	NT_187602.1:g.(203 114_203114)_(26889 0_268890)dup	GRCh38.p12	Second Pass	NT_187602.1	Chr15\|NT_1 87602.1	203,114	203,114	268,890	268,890
nssv1535688	Submitted genomic		NC_000015.8:g.(193 41464_19359417)_(1 9406459_19407285)d up	NCBI36 (hg18)		NC_000015.8	Chr15	19,341,464	19,359,417	19,406,459	19,407,285
nssv1565318	Submitted genomic		NC_000015.8:g.(193 41464_19359417)_(1 9406459_19407285)d up	NCBI36 (hg18)		NC_000015.8	Chr15	19,341,464	19,359,417	19,406,459	19,407,285

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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