nsv903078
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:34
- Validation:Not tested
- Clinical Assertions: No
- Region Size:573,699
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 5722 SVs from 107 studies. See in: genome view
Overlapping variant regions from other studies: 3076 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv903078 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nsv903078 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1520925 | copy number gain | SP51311 | SNP array | SNP genotyping analysis | 7 |
| nssv1521387 | copy number gain | SP52364 | SNP array | SNP genotyping analysis | 14 |
| nssv1521453 | copy number loss | SP52378 | SNP array | SNP genotyping analysis | 14 |
| nssv1528635 | copy number loss | SP81333 | SNP array | SNP genotyping analysis | 13 |
| nssv1528854 | copy number loss | SP81383 | SNP array | SNP genotyping analysis | 14 |
| nssv1534653 | copy number loss | MS11715 | SNP array | SNP genotyping analysis | 12 |
| nssv1535044 | copy number gain | MS11980 | SNP array | SNP genotyping analysis | 14 |
| nssv1537399 | copy number gain | MS13179 | SNP array | SNP genotyping analysis | 14 |
| nssv1540068 | copy number gain | MS14679 | SNP array | SNP genotyping analysis | 18 |
| nssv1547937 | copy number loss | MS17637 | SNP array | SNP genotyping analysis | 9 |
| nssv1548039 | copy number loss | MS17680 | SNP array | SNP genotyping analysis | 14 |
| nssv1548208 | copy number loss | MS17739 | SNP array | SNP genotyping analysis | 15 |
| nssv1548314 | copy number loss | MS17798 | SNP array | SNP genotyping analysis | 14 |
| nssv1548882 | copy number gain | MS17902 | SNP array | SNP genotyping analysis | 14 |
| nssv1549532 | copy number loss | MS18261 | SNP array | SNP genotyping analysis | 16 |
| nssv1553010 | copy number loss | MS19698 | SNP array | SNP genotyping analysis | 14 |
| nssv1555737 | copy number loss | MS21528 | SNP array | SNP genotyping analysis | 18 |
| nssv1558304 | copy number gain | MS23194 | SNP array | SNP genotyping analysis | 14 |
| nssv1558920 | copy number gain | MS23627 | SNP array | SNP genotyping analysis | 7 |
| nssv1559939 | copy number gain | MS24223 | SNP array | SNP genotyping analysis | 14 |
| nssv1561348 | copy number loss | MS24940 | SNP array | SNP genotyping analysis | 14 |
| nssv1562647 | copy number loss | MS25690 | SNP array | SNP genotyping analysis | 16 |
| nssv1563345 | copy number loss | MS25966 | SNP array | SNP genotyping analysis | 22 |
| nssv1563747 | copy number gain | IS30063 | SNP array | SNP genotyping analysis | 12 |
| nssv1564694 | copy number loss | IS30284 | SNP array | SNP genotyping analysis | 21 |
| nssv1565629 | copy number loss | IS30487 | SNP array | SNP genotyping analysis | 11 |
| nssv1567256 | copy number loss | IS31062 | SNP array | SNP genotyping analysis | 7 |
| nssv1570989 | copy number loss | IS32411 | SNP array | SNP genotyping analysis | 15 |
| nssv1571620 | copy number gain | IS32744 | SNP array | SNP genotyping analysis | 8 |
| nssv1572876 | copy number gain | IS33188 | SNP array | SNP genotyping analysis | 19 |
| nssv1578161 | copy number gain | IS34698 | SNP array | SNP genotyping analysis | 14 |
| nssv1581574 | copy number gain | IS35633 | SNP array | SNP genotyping analysis | 14 |
| nssv1588797 | copy number loss | IS38251 | SNP array | SNP genotyping analysis | 11 |
| nssv1597968 | copy number loss | IS41331 | SNP array | SNP genotyping analysis | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1520925 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1521387 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1521453 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1528635 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1528854 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1534653 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1535044 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1537399 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1540068 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1547937 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1548039 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1548208 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1548314 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1548882 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1549532 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1553010 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1555737 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1558304 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1558920 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1559939 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1561348 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1562647 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1563345 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1563747 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1564694 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1565629 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1567256 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1570989 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1571620 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1572876 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1578161 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1581574 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1588797 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1597968 | Remapped | Pass | NC_000015.10:g.(20 924655_21445175)_( 21498353_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,924,655 | 21,445,175 | 21,498,353 | - |
| nssv1520925 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1521387 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1521453 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1528635 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1528854 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1534653 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1535044 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1537399 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1540068 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1547937 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1548039 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1548208 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1548314 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1548882 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1549532 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1553010 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1555737 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1558304 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1558920 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1559939 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1561348 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1562647 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1563345 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1563747 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1564694 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1565629 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1567256 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1570989 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1571620 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1572876 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1578161 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1581574 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1588797 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 | ||
| nssv1597968 | Submitted genomic | NC_000015.8:g.(193 41464_19359417)_(1 9545168_19556128)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,341,464 | 19,359,417 | 19,545,168 | 19,556,128 |