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dbVar

Database of genomic structural variation

nsv903100

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:573,699

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 5722 SVs from 107 studies. See in: genome view

Remapped(Score: Pass):20,924,655-21,498,353

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv903100	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	20,924,655	21,463,128	21,498,353	-
nsv903100	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000015.8	Chr15	19,359,417	19,361,783	19,545,168	19,556,128

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1531109	copy number loss	MS10324	SNP array	SNP genotyping analysis	12
nssv1535248	copy number gain	MS12092	SNP array	SNP genotyping analysis	19
nssv1574765	copy number gain	IS33622	SNP array	SNP genotyping analysis	12
nssv1586306	copy number gain	IS37734	SNP array	SNP genotyping analysis	12
nssv1589836	copy number gain	IS38411	SNP array	SNP genotyping analysis	13
nssv1590457	copy number loss	IS38515	SNP array	SNP genotyping analysis	50
nssv1594060	copy number gain	IS39676	SNP array	SNP genotyping analysis	14

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1531109	Remapped	Pass	NC_000015.10:g.(20 924655_21463128)_( 21498353_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,924,655	21,463,128	21,498,353	-
nssv1535248	Remapped	Pass	NC_000015.10:g.(20 924655_21463128)_( 21498353_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,924,655	21,463,128	21,498,353	-
nssv1574765	Remapped	Pass	NC_000015.10:g.(20 924655_21463128)_( 21498353_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,924,655	21,463,128	21,498,353	-
nssv1586306	Remapped	Pass	NC_000015.10:g.(20 924655_21463128)_( 21498353_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,924,655	21,463,128	21,498,353	-
nssv1589836	Remapped	Pass	NC_000015.10:g.(20 924655_21463128)_( 21498353_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,924,655	21,463,128	21,498,353	-
nssv1590457	Remapped	Pass	NC_000015.10:g.(20 924655_21463128)_( 21498353_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,924,655	21,463,128	21,498,353	-
nssv1594060	Remapped	Pass	NC_000015.10:g.(20 924655_21463128)_( 21498353_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,924,655	21,463,128	21,498,353	-
nssv1531109	Submitted genomic		NC_000015.8:g.(193 59417_19361783)_(1 9545168_19556128)d el	NCBI36 (hg18)		NC_000015.8	Chr15	19,359,417	19,361,783	19,545,168	19,556,128
nssv1535248	Submitted genomic		NC_000015.8:g.(193 59417_19361783)_(1 9545168_19556128)d up	NCBI36 (hg18)		NC_000015.8	Chr15	19,359,417	19,361,783	19,545,168	19,556,128
nssv1574765	Submitted genomic		NC_000015.8:g.(193 59417_19361783)_(1 9545168_19556128)d up	NCBI36 (hg18)		NC_000015.8	Chr15	19,359,417	19,361,783	19,545,168	19,556,128
nssv1586306	Submitted genomic		NC_000015.8:g.(193 59417_19361783)_(1 9545168_19556128)d up	NCBI36 (hg18)		NC_000015.8	Chr15	19,359,417	19,361,783	19,545,168	19,556,128
nssv1589836	Submitted genomic		NC_000015.8:g.(193 59417_19361783)_(1 9545168_19556128)d up	NCBI36 (hg18)		NC_000015.8	Chr15	19,359,417	19,361,783	19,545,168	19,556,128
nssv1590457	Submitted genomic		NC_000015.8:g.(193 59417_19361783)_(1 9545168_19556128)d el	NCBI36 (hg18)		NC_000015.8	Chr15	19,359,417	19,361,783	19,545,168	19,556,128
nssv1594060	Submitted genomic		NC_000015.8:g.(193 59417_19361783)_(1 9545168_19556128)d up	NCBI36 (hg18)		NC_000015.8	Chr15	19,359,417	19,361,783	19,545,168	19,556,128

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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