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dbVar

Database of genomic structural variation

nsv903476

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:147,135

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 4102 SVs from 107 studies. See in: genome view

Remapped(Score: Pass):22,161,108-22,308,242

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv903476	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	22,161,108	22,178,051	22,308,242	-
nsv903476	Remapped	Pass	GRCh37.p13	Primary Assembly	First Pass	NC_000015.9	Chr15	22,449,059	22,449,059	22,652,330	22,652,330
nsv903476	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000015.8	Chr15	19,950,423	19,967,366	20,093,116	20,203,694

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1539693	copy number gain	MS14450	SNP array	SNP genotyping analysis	12
nssv1555393	copy number gain	MS21309	SNP array	SNP genotyping analysis	10
nssv1565400	copy number gain	IS30409	SNP array	SNP genotyping analysis	21
nssv1596676	copy number gain	IS40606	SNP array	SNP genotyping analysis	11

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1539693	Remapped	Pass	NC_000015.10:g.(22 161108_22178051)_( 22308242_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	22,161,108	22,178,051	22,308,242	-
nssv1555393	Remapped	Pass	NC_000015.10:g.(22 161108_22178051)_( 22308242_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	22,161,108	22,178,051	22,308,242	-
nssv1565400	Remapped	Pass	NC_000015.10:g.(22 161108_22178051)_( 22308242_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	22,161,108	22,178,051	22,308,242	-
nssv1596676	Remapped	Pass	NC_000015.10:g.(22 161108_22178051)_( 22308242_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	22,161,108	22,178,051	22,308,242	-
nssv1539693	Remapped	Pass	NC_000015.9:g.(224 49059_22449059)_(2 2652330_22652330)d up	GRCh37.p13	First Pass	NC_000015.9	Chr15	22,449,059	22,449,059	22,652,330	22,652,330
nssv1555393	Remapped	Pass	NC_000015.9:g.(224 49059_22449059)_(2 2652330_22652330)d up	GRCh37.p13	First Pass	NC_000015.9	Chr15	22,449,059	22,449,059	22,652,330	22,652,330
nssv1565400	Remapped	Pass	NC_000015.9:g.(224 49059_22449059)_(2 2652330_22652330)d up	GRCh37.p13	First Pass	NC_000015.9	Chr15	22,449,059	22,449,059	22,652,330	22,652,330
nssv1596676	Remapped	Pass	NC_000015.9:g.(224 49059_22449059)_(2 2652330_22652330)d up	GRCh37.p13	First Pass	NC_000015.9	Chr15	22,449,059	22,449,059	22,652,330	22,652,330
nssv1539693	Submitted genomic		NC_000015.8:g.(199 50423_19967366)_(2 0093116_20203694)d up	NCBI36 (hg18)		NC_000015.8	Chr15	19,950,423	19,967,366	20,093,116	20,203,694
nssv1555393	Submitted genomic		NC_000015.8:g.(199 50423_19967366)_(2 0093116_20203694)d up	NCBI36 (hg18)		NC_000015.8	Chr15	19,950,423	19,967,366	20,093,116	20,203,694
nssv1565400	Submitted genomic		NC_000015.8:g.(199 50423_19967366)_(2 0093116_20203694)d up	NCBI36 (hg18)		NC_000015.8	Chr15	19,950,423	19,967,366	20,093,116	20,203,694
nssv1596676	Submitted genomic		NC_000015.8:g.(199 50423_19967366)_(2 0093116_20203694)d up	NCBI36 (hg18)		NC_000015.8	Chr15	19,950,423	19,967,366	20,093,116	20,203,694

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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