nsv903476
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:147,135
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 4102 SVs from 107 studies. See in: genome view
Overlapping variant regions from other studies: 4415 SVs from 109 studies. See in: genome view
Overlapping variant regions from other studies: 2667 SVs from 34 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv903476 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 22,161,108 | 22,178,051 | 22,308,242 | - |
nsv903476 | Remapped | Pass | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 22,449,059 | 22,449,059 | 22,652,330 | 22,652,330 |
nsv903476 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 19,950,423 | 19,967,366 | 20,093,116 | 20,203,694 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv1539693 | copy number gain | MS14450 | SNP array | SNP genotyping analysis | 12 |
nssv1555393 | copy number gain | MS21309 | SNP array | SNP genotyping analysis | 10 |
nssv1565400 | copy number gain | IS30409 | SNP array | SNP genotyping analysis | 21 |
nssv1596676 | copy number gain | IS40606 | SNP array | SNP genotyping analysis | 11 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv1539693 | Remapped | Pass | NC_000015.10:g.(22 161108_22178051)_( 22308242_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,161,108 | 22,178,051 | 22,308,242 | - |
nssv1555393 | Remapped | Pass | NC_000015.10:g.(22 161108_22178051)_( 22308242_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,161,108 | 22,178,051 | 22,308,242 | - |
nssv1565400 | Remapped | Pass | NC_000015.10:g.(22 161108_22178051)_( 22308242_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,161,108 | 22,178,051 | 22,308,242 | - |
nssv1596676 | Remapped | Pass | NC_000015.10:g.(22 161108_22178051)_( 22308242_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,161,108 | 22,178,051 | 22,308,242 | - |
nssv1539693 | Remapped | Pass | NC_000015.9:g.(224 49059_22449059)_(2 2652330_22652330)d up | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,449,059 | 22,449,059 | 22,652,330 | 22,652,330 |
nssv1555393 | Remapped | Pass | NC_000015.9:g.(224 49059_22449059)_(2 2652330_22652330)d up | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,449,059 | 22,449,059 | 22,652,330 | 22,652,330 |
nssv1565400 | Remapped | Pass | NC_000015.9:g.(224 49059_22449059)_(2 2652330_22652330)d up | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,449,059 | 22,449,059 | 22,652,330 | 22,652,330 |
nssv1596676 | Remapped | Pass | NC_000015.9:g.(224 49059_22449059)_(2 2652330_22652330)d up | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,449,059 | 22,449,059 | 22,652,330 | 22,652,330 |
nssv1539693 | Submitted genomic | NC_000015.8:g.(199 50423_19967366)_(2 0093116_20203694)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,950,423 | 19,967,366 | 20,093,116 | 20,203,694 | ||
nssv1555393 | Submitted genomic | NC_000015.8:g.(199 50423_19967366)_(2 0093116_20203694)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,950,423 | 19,967,366 | 20,093,116 | 20,203,694 | ||
nssv1565400 | Submitted genomic | NC_000015.8:g.(199 50423_19967366)_(2 0093116_20203694)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,950,423 | 19,967,366 | 20,093,116 | 20,203,694 | ||
nssv1596676 | Submitted genomic | NC_000015.8:g.(199 50423_19967366)_(2 0093116_20203694)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,950,423 | 19,967,366 | 20,093,116 | 20,203,694 |