nsv903607
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:192,204
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2428 SVs from 102 studies. See in: genome view
Overlapping variant regions from other studies: 2428 SVs from 102 studies. See in: genome view
Overlapping variant regions from other studies: 954 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv903607 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 24,101,079 | 24,109,283 | 24,287,455 | 24,293,282 |
| nsv903607 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 24,346,226 | 24,354,430 | 24,532,602 | 24,538,429 |
| nsv903607 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 21,897,319 | 21,905,523 | 22,083,695 | 22,089,522 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1535679 | copy number loss | MS12387 | SNP array | SNP genotyping analysis | 14 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1535679 | Remapped | Perfect | NC_000015.10:g.(24 101079_24109283)_( 24287455_24293282) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,101,079 | 24,109,283 | 24,287,455 | 24,293,282 |
| nssv1535679 | Remapped | Perfect | NC_000015.9:g.(243 46226_24354430)_(2 4532602_24538429)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,346,226 | 24,354,430 | 24,532,602 | 24,538,429 |
| nssv1535679 | Submitted genomic | NC_000015.8:g.(218 97319_21905523)_(2 2083695_22089522)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,897,319 | 21,905,523 | 22,083,695 | 22,089,522 |