nsv903636
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:21
- Validation:Not tested
- Clinical Assertions: No
- Region Size:56,204
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1661 SVs from 90 studies. See in: genome view
Overlapping variant regions from other studies: 1661 SVs from 90 studies. See in: genome view
Overlapping variant regions from other studies: 712 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv903636 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nsv903636 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nsv903636 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1535636 | copy number loss | MS12345 | SNP array | SNP genotyping analysis | 6 |
| nssv1549469 | copy number loss | MS18248 | SNP array | SNP genotyping analysis | 12 |
| nssv1556940 | copy number loss | MS22279 | SNP array | SNP genotyping analysis | 12 |
| nssv1563266 | copy number loss | MS25941 | SNP array | SNP genotyping analysis | 11 |
| nssv1563804 | copy number loss | IS30080 | SNP array | SNP genotyping analysis | 6 |
| nssv1564962 | copy number loss | IS30325 | SNP array | SNP genotyping analysis | 17 |
| nssv1565748 | copy number loss | IS30520 | SNP array | SNP genotyping analysis | 6 |
| nssv1568809 | copy number loss | IS31346 | SNP array | SNP genotyping analysis | 14 |
| nssv1573307 | copy number loss | IS33263 | SNP array | SNP genotyping analysis | 36 |
| nssv1575551 | copy number loss | IS33772 | SNP array | SNP genotyping analysis | 11 |
| nssv1578183 | copy number loss | IS34701 | SNP array | SNP genotyping analysis | 7 |
| nssv1578360 | copy number loss | IS34762 | SNP array | SNP genotyping analysis | 25 |
| nssv1578495 | copy number loss | IS34791 | SNP array | SNP genotyping analysis | 13 |
| nssv1579705 | copy number loss | IS35167 | SNP array | SNP genotyping analysis | 19 |
| nssv1587906 | copy number gain | IS38131 | SNP array | SNP genotyping analysis | 6 |
| nssv1590415 | copy number loss | IS38507 | SNP array | SNP genotyping analysis | 9 |
| nssv1596013 | copy number loss | IS40387 | SNP array | SNP genotyping analysis | 14 |
| nssv1596535 | copy number loss | IS40557 | SNP array | SNP genotyping analysis | 14 |
| nssv1598385 | copy number loss | IS41166 | SNP array | SNP genotyping analysis | 14 |
| nssv1599244 | copy number loss | IS41497 | SNP array | SNP genotyping analysis | 12 |
| nssv1600614 | copy number loss | IS41905 | SNP array | SNP genotyping analysis | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1535636 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1549469 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1556940 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1563266 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1563804 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1564962 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1565748 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1568809 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1573307 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1575551 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1578183 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1578360 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1578495 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1579705 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1587906 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1590415 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1596013 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1596535 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1598385 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1599244 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1600614 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24226855_24235468) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,226,855 | 24,235,468 |
| nssv1535636 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1549469 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1556940 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1563266 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1563804 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1564962 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1565748 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1568809 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1573307 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1575551 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1578183 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1578360 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1578495 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1579705 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1587906 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d up | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1590415 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1596013 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1596535 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1598385 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1599244 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1600614 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4472002_24480615)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,472,002 | 24,480,615 |
| nssv1535636 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1549469 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1556940 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1563266 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1563804 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1564962 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1565748 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1568809 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1573307 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1575551 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1578183 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1578360 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1578495 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1579705 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1587906 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1590415 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1596013 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1596535 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1598385 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1599244 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 | ||
| nssv1600614 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2023095_22031708)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,023,095 | 22,031,708 |