nsv903637
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:11
- Validation:Not tested
- Clinical Assertions: No
- Region Size:60,749
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1674 SVs from 90 studies. See in: genome view
Overlapping variant regions from other studies: 1674 SVs from 90 studies. See in: genome view
Overlapping variant regions from other studies: 714 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv903637 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,235,468 | 24,240,013 |
| nsv903637 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,480,615 | 24,485,160 |
| nsv903637 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,031,708 | 22,036,253 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1563607 | copy number loss | MS26123 | SNP array | SNP genotyping analysis | 13 |
| nssv1565438 | copy number loss | IS30423 | SNP array | SNP genotyping analysis | 16 |
| nssv1565486 | copy number loss | IS30432 | SNP array | SNP genotyping analysis | 46 |
| nssv1566380 | copy number loss | IS30669 | SNP array | SNP genotyping analysis | 15 |
| nssv1582377 | copy number loss | IS35911 | SNP array | SNP genotyping analysis | 89 |
| nssv1587179 | copy number loss | IS37992 | SNP array | SNP genotyping analysis | 13 |
| nssv1590071 | copy number loss | IS38455 | SNP array | SNP genotyping analysis | 14 |
| nssv1598073 | copy number loss | IS41045 | SNP array | SNP genotyping analysis | 9 |
| nssv1598851 | copy number loss | IS40907 | SNP array | SNP genotyping analysis | 11 |
| nssv1600098 | copy number loss | IS41839 | SNP array | SNP genotyping analysis | 20 |
| nssv1601154 | copy number loss | IS41979 | SNP array | SNP genotyping analysis | 14 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1563607 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24235468_24240013) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,235,468 | 24,240,013 |
| nssv1565438 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24235468_24240013) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,235,468 | 24,240,013 |
| nssv1565486 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24235468_24240013) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,235,468 | 24,240,013 |
| nssv1566380 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24235468_24240013) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,235,468 | 24,240,013 |
| nssv1582377 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24235468_24240013) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,235,468 | 24,240,013 |
| nssv1587179 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24235468_24240013) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,235,468 | 24,240,013 |
| nssv1590071 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24235468_24240013) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,235,468 | 24,240,013 |
| nssv1598073 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24235468_24240013) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,235,468 | 24,240,013 |
| nssv1598851 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24235468_24240013) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,235,468 | 24,240,013 |
| nssv1600098 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24235468_24240013) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,235,468 | 24,240,013 |
| nssv1601154 | Remapped | Perfect | NC_000015.10:g.(24 179265_24183151)_( 24235468_24240013) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,179,265 | 24,183,151 | 24,235,468 | 24,240,013 |
| nssv1563607 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4480615_24485160)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,480,615 | 24,485,160 |
| nssv1565438 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4480615_24485160)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,480,615 | 24,485,160 |
| nssv1565486 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4480615_24485160)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,480,615 | 24,485,160 |
| nssv1566380 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4480615_24485160)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,480,615 | 24,485,160 |
| nssv1582377 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4480615_24485160)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,480,615 | 24,485,160 |
| nssv1587179 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4480615_24485160)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,480,615 | 24,485,160 |
| nssv1590071 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4480615_24485160)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,480,615 | 24,485,160 |
| nssv1598073 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4480615_24485160)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,480,615 | 24,485,160 |
| nssv1598851 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4480615_24485160)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,480,615 | 24,485,160 |
| nssv1600098 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4480615_24485160)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,480,615 | 24,485,160 |
| nssv1601154 | Remapped | Perfect | NC_000015.9:g.(244 24412_24428298)_(2 4480615_24485160)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,424,412 | 24,428,298 | 24,480,615 | 24,485,160 |
| nssv1563607 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2031708_22036253)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,031,708 | 22,036,253 | ||
| nssv1565438 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2031708_22036253)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,031,708 | 22,036,253 | ||
| nssv1565486 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2031708_22036253)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,031,708 | 22,036,253 | ||
| nssv1566380 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2031708_22036253)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,031,708 | 22,036,253 | ||
| nssv1582377 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2031708_22036253)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,031,708 | 22,036,253 | ||
| nssv1587179 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2031708_22036253)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,031,708 | 22,036,253 | ||
| nssv1590071 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2031708_22036253)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,031,708 | 22,036,253 | ||
| nssv1598073 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2031708_22036253)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,031,708 | 22,036,253 | ||
| nssv1598851 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2031708_22036253)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,031,708 | 22,036,253 | ||
| nssv1600098 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2031708_22036253)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,031,708 | 22,036,253 | ||
| nssv1601154 | Submitted genomic | NC_000015.8:g.(219 75505_21979391)_(2 2031708_22036253)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 21,975,505 | 21,979,391 | 22,031,708 | 22,036,253 |