nsv903774
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:313,234
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1353 SVs from 100 studies. See in: genome view
Overlapping variant regions from other studies: 1353 SVs from 100 studies. See in: genome view
Overlapping variant regions from other studies: 592 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv903774 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 30,167,332 | 30,173,945 | 30,471,873 | 30,480,565 |
| nsv903774 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 30,459,535 | 30,466,148 | 30,764,076 | 30,772,768 |
| nsv903774 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 28,246,827 | 28,253,440 | 28,551,368 | 28,560,060 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1596154 | copy number loss | IS40416 | SNP array | SNP genotyping analysis | 19 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1596154 | Remapped | Perfect | NC_000015.10:g.(30 167332_30173945)_( 30471873_30480565) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 30,167,332 | 30,173,945 | 30,471,873 | 30,480,565 |
| nssv1596154 | Remapped | Perfect | NC_000015.9:g.(304 59535_30466148)_(3 0764076_30772768)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 30,459,535 | 30,466,148 | 30,764,076 | 30,772,768 |
| nssv1596154 | Submitted genomic | NC_000015.8:g.(282 46827_28253440)_(2 8551368_28560060)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 28,246,827 | 28,253,440 | 28,551,368 | 28,560,060 |