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dbVar

Database of genomic structural variation

nsv903788

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:217,788

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1155 SVs from 99 studies. See in: genome view

Remapped(Score: Perfect):30,194,842-30,412,629

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv903788	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	30,194,842	30,198,235	30,389,978	30,412,629
nsv903788	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000015.9	Chr15	30,487,045	30,490,438	30,682,181	30,704,832
nsv903788	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000015.8	Chr15	28,274,337	28,277,730	28,469,473	28,492,124

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1522255	copy number loss	SP52863	SNP array	SNP genotyping analysis	14
nssv1562864	copy number loss	MS25756	SNP array	SNP genotyping analysis	20
nssv1573028	copy number loss	IS33232	SNP array	SNP genotyping analysis	15
nssv1591860	copy number loss	IS39078	SNP array	SNP genotyping analysis	9

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1522255	Remapped	Perfect	NC_000015.10:g.(30 194842_30198235)_( 30389978_30412629) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	30,194,842	30,198,235	30,389,978	30,412,629
nssv1562864	Remapped	Perfect	NC_000015.10:g.(30 194842_30198235)_( 30389978_30412629) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	30,194,842	30,198,235	30,389,978	30,412,629
nssv1573028	Remapped	Perfect	NC_000015.10:g.(30 194842_30198235)_( 30389978_30412629) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	30,194,842	30,198,235	30,389,978	30,412,629
nssv1591860	Remapped	Perfect	NC_000015.10:g.(30 194842_30198235)_( 30389978_30412629) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	30,194,842	30,198,235	30,389,978	30,412,629
nssv1522255	Remapped	Perfect	NC_000015.9:g.(304 87045_30490438)_(3 0682181_30704832)d el	GRCh37.p13	First Pass	NC_000015.9	Chr15	30,487,045	30,490,438	30,682,181	30,704,832
nssv1562864	Remapped	Perfect	NC_000015.9:g.(304 87045_30490438)_(3 0682181_30704832)d el	GRCh37.p13	First Pass	NC_000015.9	Chr15	30,487,045	30,490,438	30,682,181	30,704,832
nssv1573028	Remapped	Perfect	NC_000015.9:g.(304 87045_30490438)_(3 0682181_30704832)d el	GRCh37.p13	First Pass	NC_000015.9	Chr15	30,487,045	30,490,438	30,682,181	30,704,832
nssv1591860	Remapped	Perfect	NC_000015.9:g.(304 87045_30490438)_(3 0682181_30704832)d el	GRCh37.p13	First Pass	NC_000015.9	Chr15	30,487,045	30,490,438	30,682,181	30,704,832
nssv1522255	Submitted genomic		NC_000015.8:g.(282 74337_28277730)_(2 8469473_28492124)d el	NCBI36 (hg18)		NC_000015.8	Chr15	28,274,337	28,277,730	28,469,473	28,492,124
nssv1562864	Submitted genomic		NC_000015.8:g.(282 74337_28277730)_(2 8469473_28492124)d el	NCBI36 (hg18)		NC_000015.8	Chr15	28,274,337	28,277,730	28,469,473	28,492,124
nssv1573028	Submitted genomic		NC_000015.8:g.(282 74337_28277730)_(2 8469473_28492124)d el	NCBI36 (hg18)		NC_000015.8	Chr15	28,274,337	28,277,730	28,469,473	28,492,124
nssv1591860	Submitted genomic		NC_000015.8:g.(282 74337_28277730)_(2 8469473_28492124)d el	NCBI36 (hg18)		NC_000015.8	Chr15	28,274,337	28,277,730	28,469,473	28,492,124

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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