nsv903856
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:449,120
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2170 SVs from 112 studies. See in: genome view
Overlapping variant regions from other studies: 992 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 1154 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 2170 SVs from 112 studies. See in: genome view
Overlapping variant regions from other studies: 897 SVs from 32 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv903856 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 31,726,528 | 31,726,528 | 32,175,647 | 32,175,647 |
| nsv903856 | Remapped | Good | GRCh38.p12 | ALT_REF_LOCI_2 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 4,011,664 | 4,011,664 | 4,440,034 | - |
| nsv903856 | Remapped | Good | GRCh38.p12 | PATCHES | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 3,899,212 | 3,899,212 | 4,327,582 | - |
| nsv903856 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 32,018,731 | 32,019,919 | 32,451,488 | 32,467,848 |
| nsv903856 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 29,806,023 | 29,807,211 | 30,238,780 | 30,255,140 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1501059 | copy number gain | SP50850 | SNP array | SNP genotyping analysis | 20 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1501059 | Remapped | Good | NT_187660.1:g.(401 1664_4011664)_(444 0034_?)dup | GRCh38.p12 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 4,011,664 | 4,011,664 | 4,440,034 | - |
| nssv1501059 | Remapped | Good | NW_011332701.1:g.( 3899212_3899212)_( 4327582_?)dup | GRCh38.p12 | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 3,899,212 | 3,899,212 | 4,327,582 | - |
| nssv1501059 | Remapped | Perfect | NC_000015.10:g.(31 726528_31726528)_( 32175647_32175647) dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 31,726,528 | 31,726,528 | 32,175,647 | 32,175,647 |
| nssv1501059 | Remapped | Perfect | NC_000015.9:g.(320 18731_32019919)_(3 2451488_32467848)d up | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 32,018,731 | 32,019,919 | 32,451,488 | 32,467,848 |
| nssv1501059 | Submitted genomic | NC_000015.8:g.(298 06023_29807211)_(3 0238780_30255140)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 29,806,023 | 29,807,211 | 30,238,780 | 30,255,140 |