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dbVar

Database of genomic structural variation

nsv903908

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:89,842

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1196 SVs from 99 studies. See in: genome view

Remapped(Score: Perfect):32,151,995-32,241,836

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv903908	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	32,151,995	32,159,287	32,222,725	32,241,836
nsv903908	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000015.9	Chr15	32,444,196	32,451,488	32,514,926	32,534,037
nsv903908	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000015.8	Chr15	30,231,488	30,238,780	30,302,218	30,321,329

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1535681	copy number loss	MS12387	SNP array	SNP genotyping analysis	14
nssv1536259	copy number loss	MS12667	SNP array	SNP genotyping analysis	11
nssv1542864	copy number loss	MS15923	SNP array	SNP genotyping analysis	6
nssv1592065	copy number gain	IS39205	SNP array	SNP genotyping analysis	20

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1535681	Remapped	Perfect	NC_000015.10:g.(32 151995_32159287)_( 32222725_32241836) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	32,151,995	32,159,287	32,222,725	32,241,836
nssv1536259	Remapped	Perfect	NC_000015.10:g.(32 151995_32159287)_( 32222725_32241836) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	32,151,995	32,159,287	32,222,725	32,241,836
nssv1542864	Remapped	Perfect	NC_000015.10:g.(32 151995_32159287)_( 32222725_32241836) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	32,151,995	32,159,287	32,222,725	32,241,836
nssv1592065	Remapped	Perfect	NC_000015.10:g.(32 151995_32159287)_( 32222725_32241836) dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	32,151,995	32,159,287	32,222,725	32,241,836
nssv1535681	Remapped	Perfect	NC_000015.9:g.(324 44196_32451488)_(3 2514926_32534037)d el	GRCh37.p13	First Pass	NC_000015.9	Chr15	32,444,196	32,451,488	32,514,926	32,534,037
nssv1536259	Remapped	Perfect	NC_000015.9:g.(324 44196_32451488)_(3 2514926_32534037)d el	GRCh37.p13	First Pass	NC_000015.9	Chr15	32,444,196	32,451,488	32,514,926	32,534,037
nssv1542864	Remapped	Perfect	NC_000015.9:g.(324 44196_32451488)_(3 2514926_32534037)d el	GRCh37.p13	First Pass	NC_000015.9	Chr15	32,444,196	32,451,488	32,514,926	32,534,037
nssv1592065	Remapped	Perfect	NC_000015.9:g.(324 44196_32451488)_(3 2514926_32534037)d up	GRCh37.p13	First Pass	NC_000015.9	Chr15	32,444,196	32,451,488	32,514,926	32,534,037
nssv1535681	Submitted genomic		NC_000015.8:g.(302 31488_30238780)_(3 0302218_30321329)d el	NCBI36 (hg18)		NC_000015.8	Chr15	30,231,488	30,238,780	30,302,218	30,321,329
nssv1536259	Submitted genomic		NC_000015.8:g.(302 31488_30238780)_(3 0302218_30321329)d el	NCBI36 (hg18)		NC_000015.8	Chr15	30,231,488	30,238,780	30,302,218	30,321,329
nssv1542864	Submitted genomic		NC_000015.8:g.(302 31488_30238780)_(3 0302218_30321329)d el	NCBI36 (hg18)		NC_000015.8	Chr15	30,231,488	30,238,780	30,302,218	30,321,329
nssv1592065	Submitted genomic		NC_000015.8:g.(302 31488_30238780)_(3 0302218_30321329)d up	NCBI36 (hg18)		NC_000015.8	Chr15	30,231,488	30,238,780	30,302,218	30,321,329

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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