nsv904404
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:164,006
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1069 SVs from 89 studies. See in: genome view
Overlapping variant regions from other studies: 1069 SVs from 89 studies. See in: genome view
Overlapping variant regions from other studies: 571 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv904404 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 76,577,588 | 76,579,989 | 76,685,798 | 76,741,593 |
| nsv904404 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 76,869,929 | 76,872,330 | 76,978,139 | 77,033,934 |
| nsv904404 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 74,656,984 | 74,659,385 | 74,765,194 | 74,820,989 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1567338 | copy number loss | IS31067 | SNP array | SNP genotyping analysis | 66 |
| nssv1568876 | copy number loss | IS31369 | SNP array | SNP genotyping analysis | 41 |
| nssv1570354 | copy number loss | IS31904 | SNP array | SNP genotyping analysis | 36 |
| nssv1580234 | copy number loss | IS35244 | SNP array | SNP genotyping analysis | 23 |
| nssv1588739 | copy number loss | IS38239 | SNP array | SNP genotyping analysis | 28 |
| nssv1590729 | copy number loss | IS38575 | SNP array | SNP genotyping analysis | 17 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1567338 | Remapped | Perfect | NC_000015.10:g.(76 577588_76579989)_( 76685798_76741593) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 76,577,588 | 76,579,989 | 76,685,798 | 76,741,593 |
| nssv1568876 | Remapped | Perfect | NC_000015.10:g.(76 577588_76579989)_( 76685798_76741593) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 76,577,588 | 76,579,989 | 76,685,798 | 76,741,593 |
| nssv1570354 | Remapped | Perfect | NC_000015.10:g.(76 577588_76579989)_( 76685798_76741593) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 76,577,588 | 76,579,989 | 76,685,798 | 76,741,593 |
| nssv1580234 | Remapped | Perfect | NC_000015.10:g.(76 577588_76579989)_( 76685798_76741593) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 76,577,588 | 76,579,989 | 76,685,798 | 76,741,593 |
| nssv1588739 | Remapped | Perfect | NC_000015.10:g.(76 577588_76579989)_( 76685798_76741593) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 76,577,588 | 76,579,989 | 76,685,798 | 76,741,593 |
| nssv1590729 | Remapped | Perfect | NC_000015.10:g.(76 577588_76579989)_( 76685798_76741593) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 76,577,588 | 76,579,989 | 76,685,798 | 76,741,593 |
| nssv1567338 | Remapped | Perfect | NC_000015.9:g.(768 69929_76872330)_(7 6978139_77033934)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 76,869,929 | 76,872,330 | 76,978,139 | 77,033,934 |
| nssv1568876 | Remapped | Perfect | NC_000015.9:g.(768 69929_76872330)_(7 6978139_77033934)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 76,869,929 | 76,872,330 | 76,978,139 | 77,033,934 |
| nssv1570354 | Remapped | Perfect | NC_000015.9:g.(768 69929_76872330)_(7 6978139_77033934)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 76,869,929 | 76,872,330 | 76,978,139 | 77,033,934 |
| nssv1580234 | Remapped | Perfect | NC_000015.9:g.(768 69929_76872330)_(7 6978139_77033934)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 76,869,929 | 76,872,330 | 76,978,139 | 77,033,934 |
| nssv1588739 | Remapped | Perfect | NC_000015.9:g.(768 69929_76872330)_(7 6978139_77033934)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 76,869,929 | 76,872,330 | 76,978,139 | 77,033,934 |
| nssv1590729 | Remapped | Perfect | NC_000015.9:g.(768 69929_76872330)_(7 6978139_77033934)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 76,869,929 | 76,872,330 | 76,978,139 | 77,033,934 |
| nssv1567338 | Submitted genomic | NC_000015.8:g.(746 56984_74659385)_(7 4765194_74820989)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 74,656,984 | 74,659,385 | 74,765,194 | 74,820,989 | ||
| nssv1568876 | Submitted genomic | NC_000015.8:g.(746 56984_74659385)_(7 4765194_74820989)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 74,656,984 | 74,659,385 | 74,765,194 | 74,820,989 | ||
| nssv1570354 | Submitted genomic | NC_000015.8:g.(746 56984_74659385)_(7 4765194_74820989)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 74,656,984 | 74,659,385 | 74,765,194 | 74,820,989 | ||
| nssv1580234 | Submitted genomic | NC_000015.8:g.(746 56984_74659385)_(7 4765194_74820989)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 74,656,984 | 74,659,385 | 74,765,194 | 74,820,989 | ||
| nssv1588739 | Submitted genomic | NC_000015.8:g.(746 56984_74659385)_(7 4765194_74820989)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 74,656,984 | 74,659,385 | 74,765,194 | 74,820,989 | ||
| nssv1590729 | Submitted genomic | NC_000015.8:g.(746 56984_74659385)_(7 4765194_74820989)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 74,656,984 | 74,659,385 | 74,765,194 | 74,820,989 |