nsv904425
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:89,187
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 517 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 517 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 227 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv904425 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 77,772,322 | 77,786,561 | 77,837,622 | 77,861,508 |
| nsv904425 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 78,064,664 | 78,078,903 | 78,129,964 | 78,153,850 |
| nsv904425 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 75,851,719 | 75,865,958 | 75,917,019 | 75,940,905 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1529869 | copy number loss | MS10123 | SNP array | SNP genotyping analysis | 152 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1529869 | Remapped | Perfect | NC_000015.10:g.(77 772322_77786561)_( 77837622_77861508) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 77,772,322 | 77,786,561 | 77,837,622 | 77,861,508 |
| nssv1529869 | Remapped | Perfect | NC_000015.9:g.(780 64664_78078903)_(7 8129964_78153850)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 78,064,664 | 78,078,903 | 78,129,964 | 78,153,850 |
| nssv1529869 | Submitted genomic | NC_000015.8:g.(758 51719_75865958)_(7 5917019_75940905)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 75,851,719 | 75,865,958 | 75,917,019 | 75,940,905 |