nsv905033
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:59,164
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 599 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 599 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 273 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv905033 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 1,754,356 | 1,757,779 | 1,808,068 | 1,813,519 |
| nsv905033 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 1,804,357 | 1,807,780 | 1,858,069 | 1,863,520 |
| nsv905033 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000016.8 | Chr16 | 1,744,358 | 1,747,781 | 1,798,070 | 1,803,521 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1566034 | copy number loss | IS30562 | SNP array | SNP genotyping analysis | 16 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1566034 | Remapped | Perfect | NC_000016.10:g.(17 54356_1757779)_(18 08068_1813519)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 1,754,356 | 1,757,779 | 1,808,068 | 1,813,519 |
| nssv1566034 | Remapped | Perfect | NC_000016.9:g.(180 4357_1807780)_(185 8069_1863520)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 1,804,357 | 1,807,780 | 1,858,069 | 1,863,520 |
| nssv1566034 | Submitted genomic | NC_000016.8:g.(174 4358_1747781)_(179 8070_1803521)del | NCBI36 (hg18) | NC_000016.8 | Chr16 | 1,744,358 | 1,747,781 | 1,798,070 | 1,803,521 |