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dbVar

Database of genomic structural variation

nsv905094

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:39,565

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 488 SVs from 61 studies. See in: genome view

Remapped(Score: Perfect):1,995,730-2,035,294

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv905094	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	1,995,730	1,997,810	2,024,218	2,035,294
nsv905094	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	2,045,731	2,047,811	2,074,219	2,085,295
nsv905094	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	1,985,732	1,987,812	2,014,220	2,025,296

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1576386	copy number gain	IS34051	SNP array	SNP genotyping analysis	16
nssv1577844	copy number gain	IS34582	SNP array	SNP genotyping analysis	9

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1576386	Remapped	Perfect	NC_000016.10:g.(19 95730_1997810)_(20 24218_2035294)dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	1,995,730	1,997,810	2,024,218	2,035,294
nssv1577844	Remapped	Perfect	NC_000016.10:g.(19 95730_1997810)_(20 24218_2035294)dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	1,995,730	1,997,810	2,024,218	2,035,294
nssv1576386	Remapped	Perfect	NC_000016.9:g.(204 5731_2047811)_(207 4219_2085295)dup	GRCh37.p13	First Pass	NC_000016.9	Chr16	2,045,731	2,047,811	2,074,219	2,085,295
nssv1577844	Remapped	Perfect	NC_000016.9:g.(204 5731_2047811)_(207 4219_2085295)dup	GRCh37.p13	First Pass	NC_000016.9	Chr16	2,045,731	2,047,811	2,074,219	2,085,295
nssv1576386	Submitted genomic		NC_000016.8:g.(198 5732_1987812)_(201 4220_2025296)dup	NCBI36 (hg18)		NC_000016.8	Chr16	1,985,732	1,987,812	2,014,220	2,025,296
nssv1577844	Submitted genomic		NC_000016.8:g.(198 5732_1987812)_(201 4220_2025296)dup	NCBI36 (hg18)		NC_000016.8	Chr16	1,985,732	1,987,812	2,014,220	2,025,296

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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