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dbVar

Database of genomic structural variation

nsv905268

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:481,463

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2027 SVs from 89 studies. See in: genome view

Remapped(Score: Perfect):6,200,970-6,682,432

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv905268	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	6,200,970	6,205,415	6,679,356	6,682,432
nsv905268	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	6,250,971	6,255,416	6,729,357	6,732,433
nsv905268	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	6,190,972	6,195,417	6,669,358	6,672,434

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1533452	copy number loss	MS11191	SNP array	SNP genotyping analysis	13
nssv1559060	copy number loss	MS23703	SNP array	SNP genotyping analysis	13

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1533452	Remapped	Perfect	NC_000016.10:g.(62 00970_6205415)_(66 79356_6682432)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	6,200,970	6,205,415	6,679,356	6,682,432
nssv1559060	Remapped	Perfect	NC_000016.10:g.(62 00970_6205415)_(66 79356_6682432)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	6,200,970	6,205,415	6,679,356	6,682,432
nssv1533452	Remapped	Perfect	NC_000016.9:g.(625 0971_6255416)_(672 9357_6732433)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	6,250,971	6,255,416	6,729,357	6,732,433
nssv1559060	Remapped	Perfect	NC_000016.9:g.(625 0971_6255416)_(672 9357_6732433)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	6,250,971	6,255,416	6,729,357	6,732,433
nssv1533452	Submitted genomic		NC_000016.8:g.(619 0972_6195417)_(666 9358_6672434)del	NCBI36 (hg18)		NC_000016.8	Chr16	6,190,972	6,195,417	6,669,358	6,672,434
nssv1559060	Submitted genomic		NC_000016.8:g.(619 0972_6195417)_(666 9358_6672434)del	NCBI36 (hg18)		NC_000016.8	Chr16	6,190,972	6,195,417	6,669,358	6,672,434

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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