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dbVar

Database of genomic structural variation

nsv905480

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:247,829

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1284 SVs from 95 studies. See in: genome view

Remapped(Score: Perfect):16,518,116-16,765,944

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv905480	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	16,518,116	16,526,470	16,738,557	16,765,944
nsv905480	Remapped	Good	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NT_187607.1	Chr16\|NT_1 87607.1	2,179,176	2,179,176	2,426,878	2,426,878
nsv905480	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	16,611,973	16,620,327	16,832,414	16,859,801
nsv905480	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	16,519,474	16,527,828	16,739,915	16,767,302

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1553731	copy number loss	MS20269	SNP array	SNP genotyping analysis	17
nssv1586654	copy number gain	IS37892	SNP array	SNP genotyping analysis	8

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1553731	Remapped	Good	NT_187607.1:g.(217 9176_2179176)_(242 6878_2426878)del	GRCh38.p12	Second Pass	NT_187607.1	Chr16\|NT_1 87607.1	2,179,176	2,179,176	2,426,878	2,426,878
nssv1586654	Remapped	Good	NT_187607.1:g.(217 9176_2179176)_(242 6878_2426878)dup	GRCh38.p12	Second Pass	NT_187607.1	Chr16\|NT_1 87607.1	2,179,176	2,179,176	2,426,878	2,426,878
nssv1553731	Remapped	Perfect	NC_000016.10:g.(16 518116_16526470)_( 16738557_16765944) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	16,518,116	16,526,470	16,738,557	16,765,944
nssv1586654	Remapped	Perfect	NC_000016.10:g.(16 518116_16526470)_( 16738557_16765944) dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	16,518,116	16,526,470	16,738,557	16,765,944
nssv1553731	Remapped	Perfect	NC_000016.9:g.(166 11973_16620327)_(1 6832414_16859801)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	16,611,973	16,620,327	16,832,414	16,859,801
nssv1586654	Remapped	Perfect	NC_000016.9:g.(166 11973_16620327)_(1 6832414_16859801)d up	GRCh37.p13	First Pass	NC_000016.9	Chr16	16,611,973	16,620,327	16,832,414	16,859,801
nssv1553731	Submitted genomic		NC_000016.8:g.(165 19474_16527828)_(1 6739915_16767302)d el	NCBI36 (hg18)		NC_000016.8	Chr16	16,519,474	16,527,828	16,739,915	16,767,302
nssv1586654	Submitted genomic		NC_000016.8:g.(165 19474_16527828)_(1 6739915_16767302)d up	NCBI36 (hg18)		NC_000016.8	Chr16	16,519,474	16,527,828	16,739,915	16,767,302

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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