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dbVar

Database of genomic structural variation

nsv905950

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:123,406

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2725 SVs from 95 studies. See in: genome view

Remapped(Score: Perfect):32,487,824-32,611,229

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv905950	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	32,487,824	32,490,515	32,593,089	32,611,229
nsv905950	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	32,499,145	32,501,836	32,604,410	32,622,550
nsv905950	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	32,406,646	32,409,337	32,511,911	32,530,051

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1548457	copy number loss	MS17852	SNP array	SNP genotyping analysis	12
nssv1549230	copy number loss	MS18143	SNP array	SNP genotyping analysis	14
nssv1553585	copy number loss	MS20196	SNP array	SNP genotyping analysis	15
nssv1595471	copy number gain	IS40230	SNP array	SNP genotyping analysis	131

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1548457	Remapped	Perfect	NC_000016.10:g.(32 487824_32490515)_( 32593089_32611229) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,487,824	32,490,515	32,593,089	32,611,229
nssv1549230	Remapped	Perfect	NC_000016.10:g.(32 487824_32490515)_( 32593089_32611229) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,487,824	32,490,515	32,593,089	32,611,229
nssv1553585	Remapped	Perfect	NC_000016.10:g.(32 487824_32490515)_( 32593089_32611229) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,487,824	32,490,515	32,593,089	32,611,229
nssv1595471	Remapped	Perfect	NC_000016.10:g.(32 487824_32490515)_( 32593089_32611229) dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,487,824	32,490,515	32,593,089	32,611,229
nssv1548457	Remapped	Perfect	NC_000016.9:g.(324 99145_32501836)_(3 2604410_32622550)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,499,145	32,501,836	32,604,410	32,622,550
nssv1549230	Remapped	Perfect	NC_000016.9:g.(324 99145_32501836)_(3 2604410_32622550)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,499,145	32,501,836	32,604,410	32,622,550
nssv1553585	Remapped	Perfect	NC_000016.9:g.(324 99145_32501836)_(3 2604410_32622550)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,499,145	32,501,836	32,604,410	32,622,550
nssv1595471	Remapped	Perfect	NC_000016.9:g.(324 99145_32501836)_(3 2604410_32622550)d up	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,499,145	32,501,836	32,604,410	32,622,550
nssv1548457	Submitted genomic		NC_000016.8:g.(324 06646_32409337)_(3 2511911_32530051)d el	NCBI36 (hg18)		NC_000016.8	Chr16	32,406,646	32,409,337	32,511,911	32,530,051
nssv1549230	Submitted genomic		NC_000016.8:g.(324 06646_32409337)_(3 2511911_32530051)d el	NCBI36 (hg18)		NC_000016.8	Chr16	32,406,646	32,409,337	32,511,911	32,530,051
nssv1553585	Submitted genomic		NC_000016.8:g.(324 06646_32409337)_(3 2511911_32530051)d el	NCBI36 (hg18)		NC_000016.8	Chr16	32,406,646	32,409,337	32,511,911	32,530,051
nssv1595471	Submitted genomic		NC_000016.8:g.(324 06646_32409337)_(3 2511911_32530051)d up	NCBI36 (hg18)		NC_000016.8	Chr16	32,406,646	32,409,337	32,511,911	32,530,051

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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