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dbVar

Database of genomic structural variation

nsv905992

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:119,683

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2716 SVs from 95 studies. See in: genome view

Remapped(Score: Perfect):32,491,547-32,611,229

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv905992	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	32,491,547	32,494,668	32,593,089	32,611,229
nsv905992	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	32,502,868	32,505,989	32,604,410	32,622,550
nsv905992	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	32,410,369	32,413,490	32,511,911	32,530,051

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1543303	copy number loss	MS16128	SNP array	SNP genotyping analysis	10
nssv1555787	copy number loss	MS21558	SNP array	SNP genotyping analysis	15
nssv1562786	copy number gain	MS25747	SNP array	SNP genotyping analysis	8

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1543303	Remapped	Perfect	NC_000016.10:g.(32 491547_32494668)_( 32593089_32611229) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,491,547	32,494,668	32,593,089	32,611,229
nssv1555787	Remapped	Perfect	NC_000016.10:g.(32 491547_32494668)_( 32593089_32611229) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,491,547	32,494,668	32,593,089	32,611,229
nssv1562786	Remapped	Perfect	NC_000016.10:g.(32 491547_32494668)_( 32593089_32611229) dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,491,547	32,494,668	32,593,089	32,611,229
nssv1543303	Remapped	Perfect	NC_000016.9:g.(325 02868_32505989)_(3 2604410_32622550)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,502,868	32,505,989	32,604,410	32,622,550
nssv1555787	Remapped	Perfect	NC_000016.9:g.(325 02868_32505989)_(3 2604410_32622550)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,502,868	32,505,989	32,604,410	32,622,550
nssv1562786	Remapped	Perfect	NC_000016.9:g.(325 02868_32505989)_(3 2604410_32622550)d up	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,502,868	32,505,989	32,604,410	32,622,550
nssv1543303	Submitted genomic		NC_000016.8:g.(324 10369_32413490)_(3 2511911_32530051)d el	NCBI36 (hg18)		NC_000016.8	Chr16	32,410,369	32,413,490	32,511,911	32,530,051
nssv1555787	Submitted genomic		NC_000016.8:g.(324 10369_32413490)_(3 2511911_32530051)d el	NCBI36 (hg18)		NC_000016.8	Chr16	32,410,369	32,413,490	32,511,911	32,530,051
nssv1562786	Submitted genomic		NC_000016.8:g.(324 10369_32413490)_(3 2511911_32530051)d up	NCBI36 (hg18)		NC_000016.8	Chr16	32,410,369	32,413,490	32,511,911	32,530,051

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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