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dbVar

Database of genomic structural variation

nsv906133

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:11,784

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1830 SVs from 80 studies. See in: genome view

Remapped(Score: Perfect):32,518,543-32,530,326

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv906133	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	32,518,543	32,519,086	32,528,261	32,530,326
nsv906133	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	32,529,864	32,530,407	32,539,582	32,541,647
nsv906133	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	32,437,365	32,437,908	32,447,083	32,449,148

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1519849	copy number loss	SP50580	SNP array	SNP genotyping analysis	13
nssv1542189	copy number loss	MS15704	SNP array	SNP genotyping analysis	32
nssv1584725	copy number loss	IS37157	SNP array	SNP genotyping analysis	15

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1519849	Remapped	Perfect	NC_000016.10:g.(32 518543_32519086)_( 32528261_32530326) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,518,543	32,519,086	32,528,261	32,530,326
nssv1542189	Remapped	Perfect	NC_000016.10:g.(32 518543_32519086)_( 32528261_32530326) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,518,543	32,519,086	32,528,261	32,530,326
nssv1584725	Remapped	Perfect	NC_000016.10:g.(32 518543_32519086)_( 32528261_32530326) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,518,543	32,519,086	32,528,261	32,530,326
nssv1519849	Remapped	Perfect	NC_000016.9:g.(325 29864_32530407)_(3 2539582_32541647)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,529,864	32,530,407	32,539,582	32,541,647
nssv1542189	Remapped	Perfect	NC_000016.9:g.(325 29864_32530407)_(3 2539582_32541647)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,529,864	32,530,407	32,539,582	32,541,647
nssv1584725	Remapped	Perfect	NC_000016.9:g.(325 29864_32530407)_(3 2539582_32541647)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,529,864	32,530,407	32,539,582	32,541,647
nssv1519849	Submitted genomic		NC_000016.8:g.(324 37365_32437908)_(3 2447083_32449148)d el	NCBI36 (hg18)		NC_000016.8	Chr16	32,437,365	32,437,908	32,447,083	32,449,148
nssv1542189	Submitted genomic		NC_000016.8:g.(324 37365_32437908)_(3 2447083_32449148)d el	NCBI36 (hg18)		NC_000016.8	Chr16	32,437,365	32,437,908	32,447,083	32,449,148
nssv1584725	Submitted genomic		NC_000016.8:g.(324 37365_32437908)_(3 2447083_32449148)d el	NCBI36 (hg18)		NC_000016.8	Chr16	32,437,365	32,437,908	32,447,083	32,449,148

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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